Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1575 ATGGCTGATGCATTTGATGAAGAGTGTGATTATCTCTTCAAGGCTGTACTGATTGGAGACTCTGGAGTTGGGAAATCAAATCTACTCTCAAGGTTTGCAAAAGATGAATTTCGCTTGGATTCCAAACCCACCATAGGAGTGGAATTCGCTTACCGCAACATCAAGGTTGGAGACAAACTCATCAAAGCTCAGATATGGGACACTGCCGGCCAAGAAAGGTTTAGAGCTATCACAAGTTCATACTACCGAGGAGCCTTAGGGGCATTGCTAGTGTATGACATAACCATGAGATCAAGTTATGAGAATGTAAGCAAATGGTTACTGGAGCTTAGAGAGTTTGGAGGGCAAGACATGGTGGTTATTCTAGTGGGAAACAAATGTGATCTGGGTCAATCAAGGGAAGTTGAGAAAGAAGAAGGAAAAGGGTTTGCAGAAACAGAAGGATTGTGTTTCATGGAAACCTCTGCTTTGAAGAATCTGAACGTTGAGGAAGTGTTCCTACAAATGATCAAAAAGATTTATGACATGACAAGCCAGAAAAATTTGGAAGCCAAAATGGATGAGAAACCCATCAATGTTTTGAGTGGCAAAGAGATCCATATTACTGATGAAGTTACTGCGACTAAACAACCTAGTACTTGCTGTTGA 648 0.412 MADAFDEECDYLFKAVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYRNIKVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITMRSSYENVSKWLLELREFGGQDMVVILVGNKCDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLQMIKKIYDMTSQKNLEAKMDEKPINVLSGKEIHITDEVTATKQPSTCC* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1575 215 Pfam Ras family 14 174 IPR001806 GO:0003924|GO:0005525
Apr2g1575 215 ProSiteProfiles small GTPase Rab1 family profile. 8 215 - -
Apr2g1575 215 TIGRFAM small_GTP: small GTP-binding protein domain 12 166 IPR005225 GO:0005525
Apr2g1575 215 ProSiteProfiles small GTPase Ras family profile. 7 215 IPR001806 GO:0003924|GO:0005525
Apr2g1575 215 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Apr2g1575 215 SMART rho_sub_3 15 176 IPR001806 GO:0003924|GO:0005525
Apr2g1575 215 SMART ras_sub_4 10 176 - -
Apr2g1575 215 SMART ran_sub_2 18 205 - -
Apr2g1575 215 CDD Rab11_like 10 174 - -
Apr2g1575 215 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 215 - -
Apr2g1575 215 PANTHER DRAB5-RELATED 1 215 - -
Apr2g1575 215 Gene3D - 5 215 IPR027417 -
Apr2g1575 215 SMART rab_sub_5 13 176 - -
Apr2g1575 215 PRINTS Transforming protein P21 ras signature 13 34 - -
Apr2g1575 215 PRINTS Transforming protein P21 ras signature 36 52 - -
Apr2g1575 215 PRINTS Transforming protein P21 ras signature 54 76 - -
Apr2g1575 215 PRINTS Transforming protein P21 ras signature 116 129 - -
Apr2g1575 215 PRINTS Transforming protein P21 ras signature 151 173 - -
Apr2g1575 215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 192 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1575 Apr-Chr2 21564526 21567701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1575 14 201 EF-hand Containing Proteins AT5G27540 28.500 3.10e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1575 K07976 - gmx:100784107 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1575 2 21564526 21567701 Apr2g1575 2 21564526 21567701 ECH