Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1540 ATGCCTACGCCATATTCAGGCATATTCCAAGGCTCCATCAGATTCAGAGCCCTGTCGCGGTTCAACTGCACTTCTGTCAGACCTTCTCTTCCCTCCATTTTCACCACTCCTCTTTACCGCACTTCCATTCGCCCTCGCTTTACGTCCTTCTCTGCCTCGCTTCGCCTCCATTCAAACGGCACGCTTAAACAGAGGCCCGTTACTTTGCCGTTTTGGCACCAACACAGCTCCAGTTATGGTCGTTTTGCCTATCAGGACCCGTCCAGTGACGATTCCGATGCCGAATTCGGCCCTTCTCCCTCTCATCCTCATTATCAACAATTGGGGGAGTCAACACTTGAAAACATTGATGAGTGGAGATGGAAGCTGACTATGCTTCTTCGCAACAAAGACGAACAAGAAGTTGTGTCCAGAGAGAAAAAAGACCGTCGCGATTTTGAGCAACTTTCAACTTTAGCTACTAGGATGGGTTTGTATAGCCGGCAGTATTCAAGAGTTGTTGTGTTTAGCAAGGCACCTTTGCCAAATTACCGCCCTGATCTCGATGATAAGCGTCCACAAAGAGAGGTAATGTTACCATTTGGTGTTCATAAAGAAGTAGACACTTATCTCCTTGCCCACCTTTCACAAAAGGCTACAAACAGGTTGGGTTCTTTGGATGATTCCTTACATAGATCAATTGATGCTAGAAGCATTCCTGCCGATGAAGGAATTTATGAGCAGACTGAGCCCACAACCCAAAATAGTGTTGTCAAGGAGAAAATCCTTCTACGAAGAAGTTTGCAACTGCGTCATCAGCAACAGGATTGGCAGGAGTCTCCTGAAGGGCAAAAGATGCTGGAATTTCGTAGAAGGCTTCCTGCATTCAAAGAGAAGGATGCATTTTTGAGAGTCATTTCAGAGAATCAGGTCGTTGTTGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAACTTCCTCAATACATATTAGAATCTGAGATTGAAGCTGCACGTGGAGCTGTATGTAACATAATTTGTACTCAGCCCAGAAGGATATCTGCTATGTCTGTTTCTGAAAGAGTTGCGGCAGAGCGTGGGGAGAAATTGGGAGAATCTGTTGGTTACAAAGTTCGTTTGGAGGGTTTGAAAGGGAGAGATACTCGTCTTCTTTTTTGCACCACAGGTGTATTATTACGGAGATTGCTTGTTGATAGGAAATTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGATTTTCTTCTCATTGTCCTGAAGGAACTTCTCCCTCGTCGTCCTGATTTGAGGTTGATTTTGATGAGTGCAACCTTAAATGCTGAGCTTTTTTCTTCATACTTTGATGGTGCTCCAACTATGCATATTCTGGGTTTTACATTTCCAGTTCGAGCATATTTTCTTGAGAATATTTTGGAAAGGACTGGATATCGGTTGACACCTTATAATCAGATTGACGACTATGGTCAAGAAAAAACATGGAAAATGCAGAAACAAGCTCAAGCTTTCAAAAAAAGAAAGAGCCAGATTGCTTCTGCTGTTGAGGATGCTTTAGAAGTTGCAGATTTTAAGGGTTATAGTCCACGCACTCAAGATTCATTGTCCTGCTGGTGCCCTGACTCAGTTGGTTTTAACCTTATTGAACACGTGCTTTGTCACATTGTTAAGAATGAAAGGCCAGGTGCCGTTTTGGTTTTTATGACTGGTTGGGATGATATAAACTCTTTGAAGGATAAACTCCAAGGTCATCCTTTGTTGGGGGATCCGAGCCGAGTATTGCTTCTTGCATGCCATGGCTCCATGGCCAGCTCTGAGCAGAGGTTGATATTTGAAAATCCTGAAGGAGGGGTGAGGAAAATTGTTTTGGCAACGAACATGGCTGAGACTAGCATTACCATCAATGATGTTGTCTTTGTGGTTGACTGTGGAAAAGCAAAAGAAACATCATATGATGCATTAAACAACACTCCTTGTTTGCTTCCATCTTGGATCTCAAAAGCTGCTGCCCGGCAGAGAAGAGGAAGGGCTGGTCGTGTTCAGCCTGGTGAATGCTACCATCTTTATCCCAGATGTGTATATGATGCTTTTGCTGACTATCAATTGCCAGAGCTCTTAAGAACACCGTTGCAGTCCTTATGTCTACAAATCAAAAGTCTACAACTTGGAAGCATCTCTGAGTTTTTATCTAAAGCTCTGCAGCCACCAGAGCCTCTATCGGTTCAAAATGCTGTTGAATATTTGAAGATTATTGGAGCATTAGATGAGAACGAAAATTTAACAGTTTTAGGGCACAAATTGTCAATGCTTCCTGTAGAGCCCAAACTTGGCAAAATGCTCATTTTGGGAGCTATCTTAAACTGTTTGGATCCTATAATGACTGTTGTTGCTGGTCTTAGTGTAAGAGATCCATTTGTGATGCCATCTGACAAGAAGGATCTTGCTGAGTCTGCCAAGGCCCGATTTGCTGCTCGTGACTATAGTGATCATCTTGCACTTGTCCGGGCTTATGAGGGTTGGAAAGATGCTGAAGCACAACAAGCTGGTTATGAGTACTGTTGGCGAAATTTTCTTTCTTCTCAAACACTTAAGGCCATTGACTCTCTTCGAAAGCAATTCTTTTACTTGCTCAAAGATATTGGTCTGGTCAATAACAATTCTGAAACTTACAATACTTGGAGTCATGAAGAGCATCTTCTCCGTGCTGTCATCTGTGCGGGTTTGTTTCCTGGAATATCCTCTGTCATGAACAAAGACAAGTCCATAGCACTGAAAACAATGGAGGATGGCCAGGTTCTTCTATATGCTAGCTCTGTAAATGCTGGTGTACCCCAAATTCCATACCCATGGTTAGTGTTTAATGAAAAGGTGAAAGTAAATTCAGTATTCCTTAGGGATTCAACTGGCATATCTGATTCAGTGCTGCTCTTATTTGGTGGGAATGTATCCCGAGGTGGACTAGATGGTCACCTGAAAATGTTGGGAGGCTATTTGGAGTTTTTTATGAAACCAGAATTAGCCAAGACTTGCTTAAGCTTAAAGAGGGAACTGGAAGAACTGATACAGAGAAAACTTCTGGATCCCATGTTGGATACTCAATCGCATAATGAGCTTCTTTCAGCAGTTAGATTGTTGGTATCAGAGGATCAGTGTGATGGTAGATTTGTCTTTGGTCGCCAGGTCGTACCAAAAATAAAGAAGGAAACAAATTCCAAAAGTAGCGGTGGAGTTGGGAGTGATAATTCTAAAAATCAGCTTCAAACATTCCTTAACAGGGCTGGACATGAATCACCAACTTACAAAACAAAGCAGCTGAAAAACAATCAATTCCGTTCTACTGTCATATTCAATGGCTTGAATTTTGTTGGTCAGCCATGCAACAGCAAAAAATTAGCAGAAAAAGCTGCTGCTGCTGAGGCTCTTCTATGGTTAAAAGGGGATACCCATTCCTCTGATGATATCAACCATGCATCTGTGCTTTTGAAAAAGAGCAGCAAGAAAAGTAGGAAAAATTCATTTAGTGGTGCTAAATGGAGTTGA 3555 0.4228 MPTPYSGIFQGSIRFRALSRFNCTSVRPSLPSIFTTPLYRTSIRPRFTSFSASLRLHSNGTLKQRPVTLPFWHQHSSSYGRFAYQDPSSDDSDAEFGPSPSHPHYQQLGESTLENIDEWRWKLTMLLRNKDEQEVVSREKKDRRDFEQLSTLATRMGLYSRQYSRVVVFSKAPLPNYRPDLDDKRPQREVMLPFGVHKEVDTYLLAHLSQKATNRLGSLDDSLHRSIDARSIPADEGIYEQTEPTTQNSVVKEKILLRRSLQLRHQQQDWQESPEGQKMLEFRRRLPAFKEKDAFLRVISENQVVVVSGETGCGKTTQLPQYILESEIEAARGAVCNIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGLKGRDTRLLFCTTGVLLRRLLVDRKLKGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPDLRLILMSATLNAELFSSYFDGAPTMHILGFTFPVRAYFLENILERTGYRLTPYNQIDDYGQEKTWKMQKQAQAFKKRKSQIASAVEDALEVADFKGYSPRTQDSLSCWCPDSVGFNLIEHVLCHIVKNERPGAVLVFMTGWDDINSLKDKLQGHPLLGDPSRVLLLACHGSMASSEQRLIFENPEGGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSKALQPPEPLSVQNAVEYLKIIGALDENENLTVLGHKLSMLPVEPKLGKMLILGAILNCLDPIMTVVAGLSVRDPFVMPSDKKDLAESAKARFAARDYSDHLALVRAYEGWKDAEAQQAGYEYCWRNFLSSQTLKAIDSLRKQFFYLLKDIGLVNNNSETYNTWSHEEHLLRAVICAGLFPGISSVMNKDKSIALKTMEDGQVLLYASSVNAGVPQIPYPWLVFNEKVKVNSVFLRDSTGISDSVLLLFGGNVSRGGLDGHLKMLGGYLEFFMKPELAKTCLSLKRELEELIQRKLLDPMLDTQSHNELLSAVRLLVSEDQCDGRFVFGRQVVPKIKKETNSKSSGGVGSDNSKNQLQTFLNRAGHESPTYKTKQLKNNQFRSTVIFNGLNFVGQPCNSKKLAEKAAAAEALLWLKGDTHSSDDINHASVLLKKSSKKSRKNSFSGAKWS* 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1540 1184 Gene3D - 546 704 IPR027417 -
Apr2g1540 1184 Pfam DEAD/DEAH box helicase 296 447 IPR011545 GO:0003676|GO:0005524
Apr2g1540 1184 SUPERFAMILY dsRNA-binding domain-like 1085 1153 - -
Apr2g1540 1184 SMART ha2_5 748 839 IPR007502 GO:0004386
Apr2g1540 1184 CDD DEXHc_RHA-like 302 462 - -
Apr2g1540 1184 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 905 987 IPR011709 -
Apr2g1540 1184 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 70 1092 - -
Apr2g1540 1184 Pfam Helicase associated domain (HA2) 749 836 IPR007502 GO:0004386
Apr2g1540 1184 Gene3D - 237 464 IPR027417 -
Apr2g1540 1184 MobiDBLite consensus disorder prediction 1164 1184 - -
Apr2g1540 1184 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1086 1151 IPR014720 -
Apr2g1540 1184 SMART helicmild6 580 686 IPR001650 -
Apr2g1540 1184 MobiDBLite consensus disorder prediction 83 107 - -
Apr2g1540 1184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 885 IPR027417 -
Apr2g1540 1184 Pfam Double-stranded RNA binding motif 1087 1149 IPR014720 -
Apr2g1540 1184 CDD SF2_C_RHA 534 694 - -
Apr2g1540 1184 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 552 726 IPR001650 -
Apr2g1540 1184 SMART DRBM_3 1087 1150 IPR014720 -
Apr2g1540 1184 Pfam Helicase conserved C-terminal domain 554 685 IPR001650 -
Apr2g1540 1184 Gene3D - 728 829 - -
Apr2g1540 1184 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 296 463 IPR014001 -
Apr2g1540 1184 SMART ultradead3 284 472 IPR014001 -
Apr2g1540 1184 Gene3D - 1069 1154 - -
Apr2g1540 1184 PANTHER ATP-DEPENDENT RNA HELICASE 70 1092 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1540 Apr-Chr2 21289900 21302646 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1540 K14442 - gmx:100791006 2029.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1540 2 21289900 21302646 Apr2g1540 2 21289900 21302646 ECH