Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1454 ATGGCCGGAAAACAGGTCGGCGGCGAGGGGTTGTCGGCGAACATGGCCGGAATGTCGAAGAATCAGCTCTACGATATCATGTCCCAGATGAAGAATCTGATAGAACAGAACCAGCAGCAGGCCAGGCAGATCCTCATCCAAAACCCTATGTTAACCAAAGCGCTTTTCCAGGCACAAATTATGCTTGGAATGGTGCAATCACCTCAAGTGGTTCCAAAAGTTCAGCCAATGGCTTCACAGAACAGTCAGCAGTCAGTACAGCCAACTCAACAGCCAAACATTCAGTCTGCTCCATTATTGCCTGGGCACAGTGGTGTGCAGGATCAAGCTGGTGTATCTCAAACCCAAATTCCTCTGAGGAAACACCAAAACCAACCTTCAGTGCCAATTTCATCTACTGCTGTTCCTCCAATGAGTCACCAATCTCAGCCCATGGCTGCACATTCTTTGCCAATGCCACAACAACCTAAAGGACATTTGACTCCCCAAGTGGCTCCAGTGTCTCTTCCACAATCGTCACAACTTCCAAACATACCTCCCCCTTCTCTTCATTCATCTTCCCAGCCCCTTCATCCAACTCAAATGCCAACTGTTTCCAGTCAGTTACAACAACCATTGCAGGCACCTGGATTTCCACATATGCCTCTGCAACCACTGCTACCATCACAGATCAGACCACCTTCAGGGCCAACCTTCCATCCCCAGTATCCCCCACAGATGGGTGCAAACTTAGGTTTTCAACATGCTGGTGCTCACAATCTTCCACAATCCATGTTTCACCCAGGTACAAAACCTCCTGCTAGTGTTGGATCCACATTCCCACAGGGACAGGCACCACTTCCAAGTCAACAATCATCTCAGTCACCTTATCAGGTTGGGAATATGCCTCTAGGGCCCGATTTTGGCAATCAAGCTGGAAATGCAATGCAAGTAGACAGAGGGTCTTCTTGGATGCCTGGTCCCTCAGAAAACCTACCACATCTTTCTGGACCACCATCTGTCATTCCTGGTCAGATGGGTGCTGCTAATCAGCCTCTTCGGCCTCCTGCGTTGACACCAGAGATGGAGAAGGCACTGCTTCAGCAGGTCATGAGTCTCACACCAGAGCAGATAAATCTTTTGCCTCCAGAACAAAGAAATCAAGTGCTGCAGCTACAACAGATGTTGCGTCAATGA 1176 0.4906 MAGKQVGGEGLSANMAGMSKNQLYDIMSQMKNLIEQNQQQARQILIQNPMLTKALFQAQIMLGMVQSPQVVPKVQPMASQNSQQSVQPTQQPNIQSAPLLPGHSGVQDQAGVSQTQIPLRKHQNQPSVPISSTAVPPMSHQSQPMAAHSLPMPQQPKGHLTPQVAPVSLPQSSQLPNIPPPSLHSSSQPLHPTQMPTVSSQLQQPLQAPGFPHMPLQPLLPSQIRPPSGPTFHPQYPPQMGANLGFQHAGAHNLPQSMFHPGTKPPASVGSTFPQGQAPLPSQQSSQSPYQVGNMPLGPDFGNQAGNAMQVDRGSSWMPGPSENLPHLSGPPSVIPGQMGAANQPLRPPALTPEMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQMLRQ* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1454 391 Pfam Transcription termination and cleavage factor C-terminal 357 391 IPR026896 GO:0031124
Apr2g1454 391 Pfam Hinge domain of cleavage stimulation factor subunit 2 11 70 IPR025742 -
Apr2g1454 391 MobiDBLite consensus disorder prediction 73 205 - -
Apr2g1454 391 MobiDBLite consensus disorder prediction 268 293 - -
Apr2g1454 391 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 391 - -
Apr2g1454 391 Gene3D - 352 391 IPR038192 -
Apr2g1454 391 MobiDBLite consensus disorder prediction 187 205 - -
Apr2g1454 391 MobiDBLite consensus disorder prediction 73 149 - -
Apr2g1454 391 MobiDBLite consensus disorder prediction 252 333 - -
Apr2g1454 391 Gene3D - 4 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1454 Apr-Chr2 20603902 20607191 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1454 - - gmx:100801770 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1454 2 20603902 20607191 Apr2g1454 2 20603902 20607191 ECH