Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1302 ATGGCCATCCTATGTCAATCAACCGTTACTTTCTCGCTTTCCTTCATCTCTACTCGGAACGATTTTACTGGCTTCACTCGTTTCCCCTGCTGCGTCACCTTCCGAAGAAACCAAACTCGCTCTTCAACTCGTCTCCCAGTGTTGTCCCGTCTCAACTCGTCCAAATCCTCCGATGCCGGCGGTTCTGTCTCGCCGGACAACGGGGACGTTGCCTATGAGCTCCACCACGATTTTTCGCTGCAGCGGCGGAGGCGTGGATCACCAGTGTTTGTGACGCTGCCGGTGAATTCGGTTAGCCGAGAGGGCCTGGTTACAAGGCCTAAAGCGATGATGTTTTCACTCAGGGCGCTAGCTATGGCTGGTGTAGAAGGTGTGGTTATTGAGATGTGGTGGGGGTTGGTTGAGAAGAATGAGCCTAGGGTTTATGATTGGAGAGGGTATAAAGAACTCGTCATGATGGCGTGTATGTGTGGCCTTAAGGTTCGTGCTGTTCTTGCTTTTCATCAGTACGGTACCGGACCTGATGATCCTAACTGGATACCACTTCCTCTATGGGTGCTTGATGAGATACATAGAGATCCAGAGTTAGCATATTGTGACAGGTTTGGAAGAAGAAATACTGAATACATTTCCCTTGGATGTGATAGTCTTCCTGTTCTACGGGGACGCTCTCCTATTCAAGCATATGCAGATCTTATGAGGGACTTTAGAGACACTTTCAGGCCTTCTCTTGGTGTTATCATTACAGGTGTACAGATTGGCATGGGTCCCAGTGGTGAACTAAGATATCCTTCATTCTCTTCCCAGAAGCCAAATTTGGCTTGGCCTCCTGAACTTGGAGAGTTTCAGTGCTATGATAAGTATATGCTTGCTTCTCTAAATGCCTCTGCAAGAAATATTGGAAAGCGTGAATGGGGAAATGGTGGTCCATTTGGTACTGGAAGTTTGATGCAAAATCCTGAGCGTACTGATTTTTTCAGAAATGATGGTGGCTCTTGGAACACATCATACGGTAAATTTTTCCTTGATTGGTATTCAGATATGCTGCTGCTGCATGGGGAAAGAATTTGCAGAGAAGCTGAAACTATATTTAGGGGTACAGAAGTCCGTATATCTGCAAAATTAGCTGCCATTCACTGGCACTTTGCCATCCAATCCCATCCATCAGAGTTAACAGCGGGCTACTATAATACTTATATTAGGGATGGATACTTACCCATCGCTCGCATGTTTAGCAAGTATGGATTCTCAATGTGTTGCTCTTGTTTTGAGATGGAAGATGCAGTTATGAAGAAGATCAATCCAGATGGTAGCCCTGAAGGTTTTCTTAGACAGCTTTTACTGGCTGCTAGGTTGTGTGACATATCACTTGAAGGTCAAAATTTTTCAACCAATTTGGATGATGGTGCATTCACCCAGGTGCTGAAGATGTCGAATTTTTACTCAAATGGGATCGAGAGGCGCCCTTTCTCATTCAACTTTGTAAGGATGGACAAAAGATTGTTTGAATCCCGAAATTGGGATCGGTTTACTCGTTTTGTGAGGCAGATGTCTACTGGAAGCATTTTTCGAGCCAGAATAAATTCTCTTGGTGACATACGGTTGAAGACCGCACCAGTGGCAGCAGAAGTGGGACTGTTGTATCAGCTATATCAGCACTCTTGA 1665 0.4541 MAILCQSTVTFSLSFISTRNDFTGFTRFPCCVTFRRNQTRSSTRLPVLSRLNSSKSSDAGGSVSPDNGDVAYELHHDFSLQRRRRGSPVFVTLPVNSVSREGLVTRPKAMMFSLRALAMAGVEGVVIEMWWGLVEKNEPRVYDWRGYKELVMMACMCGLKVRAVLAFHQYGTGPDDPNWIPLPLWVLDEIHRDPELAYCDRFGRRNTEYISLGCDSLPVLRGRSPIQAYADLMRDFRDTFRPSLGVIITGVQIGMGPSGELRYPSFSSQKPNLAWPPELGEFQCYDKYMLASLNASARNIGKREWGNGGPFGTGSLMQNPERTDFFRNDGGSWNTSYGKFFLDWYSDMLLLHGERICREAETIFRGTEVRISAKLAAIHWHFAIQSHPSELTAGYYNTYIRDGYLPIARMFSKYGFSMCCSCFEMEDAVMKKINPDGSPEGFLRQLLLAARLCDISLEGQNFSTNLDDGAFTQVLKMSNFYSNGIERRPFSFNFVRMDKRLFESRNWDRFTRFVRQMSTGSIFRARINSLGDIRLKTAPVAAEVGLLYQLYQHS* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1302 554 Gene3D Glycosidases 79 541 - -
Apr2g1302 554 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 121 135 IPR001554 GO:0000272|GO:0016161
Apr2g1302 554 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 142 160 IPR001554 GO:0000272|GO:0016161
Apr2g1302 554 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 164 185 IPR001554 GO:0000272|GO:0016161
Apr2g1302 554 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 256 278 IPR001554 GO:0000272|GO:0016161
Apr2g1302 554 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 333 352 IPR001554 GO:0000272|GO:0016161
Apr2g1302 554 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 369 385 IPR001554 GO:0000272|GO:0016161
Apr2g1302 554 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 386 397 IPR001554 GO:0000272|GO:0016161
Apr2g1302 554 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 404 427 IPR001554 GO:0000272|GO:0016161
Apr2g1302 554 PANTHER - 6 533 IPR001554 GO:0000272|GO:0016161
Apr2g1302 554 Pfam Glycosyl hydrolase family 14 91 513 IPR001554 GO:0000272|GO:0016161
Apr2g1302 554 PANTHER BETA-AMYLASE 6 533 - -
Apr2g1302 554 SUPERFAMILY (Trans)glycosidases 86 541 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1302 Apr-Chr2 19208463 19211524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1302 88 524 Glycoside Hydrolase AT4G17090 49.658 1.53e-153 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1302 K01177 - gmx:100805981 959.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1302 2 19208463 19211524 Apr2g1302 2 19208463 19211524 ECH