Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1301 ATGCCCGGTCTCGTATCCGTAAAAACCCCACCGGACGCTCCGCCGCTCCGAATCTCCTTACCCGATACCCCAACGGAGAGATCCGAATCCGCTAACATCAAAACCCCATCGCCACTCCCCAAAAAACCACCCTCTCCATCCCCTTCTCGCTCCAAAAAAAAGACTCCAGAAACCCCTCCCAACCAAGATGCCTCACTCGACAACCCCGATCTCGGCCCATTCCTTCTTAAATTGGCCCGTGACACTATCGCCTCTGGTGATGGGCCCGCTAAGGCCCTCGACTACGCCATCCGGGCCTCCAAGTCCTTCGAGCGCTGTGCCGTTGAAGGCGAGCCCAGCTTGGACCTCGCCATGAGCCTCCACGTTCTCGCCGCCATCTACTGCAGCCTTGGCAGGTTCGAAGAAGCCGTTCCCGTTCTCGAACGCGCGATCCACGTTCCTGACGTGGCAAGAGGTGCAGATCACGCGCTCGCCGCTTTCTCTGGCTACATGCAATTAGGCGACACCTTCTCCATGCTCGGTCAAGTTGACAGATCCATCTCTTGCTATGACCAGGGCCTTCAGATTCAGATCCAAGCCCTCGGCGATATCGATCCTAGAGTCGGCGAAACTTGCAGATATTTGGCTGAAGCGAATGTGCAAGCGATGCAGTTTGATAAAGCGGAGGAGTTGTGCAAGAAGACTCTGGAGATTCATCGTGCGCACAGTGAACCTGCTTCTCTTGAAGAAGCTGCTGATAGGAGGCTCATGGCGCTTATTTGCGAGGCGAAAGGAGATTATGAATCGGCGCTTGAGCATCTTGTGCTCGCTAGCATGGCTATGATTGCGAATGGTCAAGATAATGAGGTTGCGTCGATTGATGTTAGCATTGGGAATATTTACATGTCGCTTTGTCGTTTTGATGAGGCTATTTTTTCGTATCAGAAGGCGCTTACTGTTTTCAAATCTTCCAAGGGCGAAAATCACCCTTCCGTTGCGTCTGTTTTTGTGCGTCTTGCTGATTTATATCACAGGACTGGGAAGCTTCGTGAGTCCAAGTCGTATTGTGAAAATGCACTTCGGATTTACTCCAAGCCGGTGCCGGGAACTACCGCGGAAGAGATTGCCGGCGGCTTGACAGAGGTATCGGCTATTTTTGAGTCTGTGGATGAGCCGGAGGAGGCGCTGAAATTGTTGAACAGGGCAATGAAATTGTTGGAGGATAAGCCGGGGCAGCAGAGCACAATTGCGGGGATAGAAGCGCGAATGGGAGTGATGCATTACATGATTGGGAGGTATGAGGAGTCGAGAAACTCTTTTGAGAGTGCTGTGGCGAAACTCAGAGCAAGTGGGGAGAGGAAGAGTGCTTTCTTTGGTGTTGTGTTGAACCAGATGGGATTGGCCTGTGTTCAACTGTTCAAGATAGATGAGGCTGCTGAGTTGTTTGAAGAAGCTAGGGGAATCCTTGAACAGGAGTGTGGCCCCTGTCATCAGGATACTCTTGGAGTGTACAGCAATCTTGCAGCTACATATGATGCTATGGGAAGAGTGGGAGACGCGATTGAAATCTTAGAATATGTCCTTAAGTTGAGGGAAGAAAAGCTTGGAATAGCAAATCCTGATTTTGAAGATGAGAAGCGCCGGCTGGCCGAGCTTCTGAAAGAAGCAGGGAAGACAAGGGACAGAAAAGCGAAATCTCTGGAAAACCTTATTGATCCCGGCTCAAAGAGGACAAAGAAGGAGGGGACTAAGAGGTGGCCTGGTTTGGGGTTTAGAATTTAA 1761 0.5105 MPGLVSVKTPPDAPPLRISLPDTPTERSESANIKTPSPLPKKPPSPSPSRSKKKTPETPPNQDASLDNPDLGPFLLKLARDTIASGDGPAKALDYAIRASKSFERCAVEGEPSLDLAMSLHVLAAIYCSLGRFEEAVPVLERAIHVPDVARGADHALAAFSGYMQLGDTFSMLGQVDRSISCYDQGLQIQIQALGDIDPRVGETCRYLAEANVQAMQFDKAEELCKKTLEIHRAHSEPASLEEAADRRLMALICEAKGDYESALEHLVLASMAMIANGQDNEVASIDVSIGNIYMSLCRFDEAIFSYQKALTVFKSSKGENHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYSKPVPGTTAEEIAGGLTEVSAIFESVDEPEEALKLLNRAMKLLEDKPGQQSTIAGIEARMGVMHYMIGRYEESRNSFESAVAKLRASGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILEQECGPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELLKEAGKTRDRKAKSLENLIDPGSKRTKKEGTKRWPGLGFRI* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1301 586 Gene3D Tetratricopeptide repeat domain 65 160 IPR011990 GO:0005515
Apr2g1301 586 SMART tpr_5 452 485 IPR019734 GO:0005515
Apr2g1301 586 SMART tpr_5 202 235 IPR019734 GO:0005515
Apr2g1301 586 SMART tpr_5 160 193 IPR019734 GO:0005515
Apr2g1301 586 SMART tpr_5 326 359 IPR019734 GO:0005515
Apr2g1301 586 SMART tpr_5 117 150 IPR019734 GO:0005515
Apr2g1301 586 SMART tpr_5 410 443 IPR019734 GO:0005515
Apr2g1301 586 SMART tpr_5 369 402 IPR019734 GO:0005515
Apr2g1301 586 SMART tpr_5 494 527 IPR019734 GO:0005515
Apr2g1301 586 SMART tpr_5 284 317 IPR019734 GO:0005515
Apr2g1301 586 SMART tpr_5 244 277 IPR019734 GO:0005515
Apr2g1301 586 Gene3D Tetratricopeptide repeat domain 453 564 IPR011990 GO:0005515
Apr2g1301 586 SUPERFAMILY TPR-like 411 552 IPR011990 GO:0005515
Apr2g1301 586 MobiDBLite consensus disorder prediction 551 586 - -
Apr2g1301 586 ProSiteProfiles TPR repeat profile. 284 317 IPR019734 GO:0005515
Apr2g1301 586 SUPERFAMILY TPR-like 159 357 IPR011990 GO:0005515
Apr2g1301 586 SUPERFAMILY TPR-like 68 189 IPR011990 GO:0005515
Apr2g1301 586 MobiDBLite consensus disorder prediction 51 65 - -
Apr2g1301 586 Pfam MalT-like TPR region 121 271 IPR041617 -
Apr2g1301 586 MobiDBLite consensus disorder prediction 551 580 - -
Apr2g1301 586 Gene3D Tetratricopeptide repeat domain 161 270 IPR011990 GO:0005515
Apr2g1301 586 Pfam Tetratricopeptide repeat 454 526 - -
Apr2g1301 586 Pfam Tetratricopeptide repeat 283 357 - -
Apr2g1301 586 Coils Coil 535 555 - -
Apr2g1301 586 MobiDBLite consensus disorder prediction 1 71 - -
Apr2g1301 586 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 585 - -
Apr2g1301 586 Gene3D Tetratricopeptide repeat domain 271 452 IPR011990 GO:0005515
Apr2g1301 586 PANTHER - 1 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1301 Apr-Chr2 19195367 19198898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1301 117 329 Glycosyltransferase AT3G04240 24.545 9.13e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1301 - - gmx:100815100 1037.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1301 2 19195367 19198898 Apr2g1301 2 19195367 19198898 ECH