Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1285 ATGAGCTGCTTTTGCTTGAAAAAAGCTAGACCAAAGACTAAGCAAGAACTAAACACTATTCTTGCTTCAGAGACATCTTTTACTGTGAATGAGATTGAGGCTTTGCTTTGCACGTTTAAGAAACTAAGCAGTGTCGATGATCACTTCATTCACAAGAAGGAGTTCCATCTTGCACTTTTAAATAATAGTGGCAAGCAGAATCTATTTGCAGACAGGGTATTTGATATGTTTGATATTAAGCGTAATGGAGTAATTGATTTTGGGGAATTTGTTCGCTCACTGAACGTCTTTCATCCAAATGCATCTGAAGAGGAGAAAATTGAATTTGCATTTAAATTGTTTGACCTTCGACAAACCGGATTCATTGAGCGTCATGGGTTGAAGGAAATGGTTTTGGCTACTCTTACTGAATCAGATGTTACAGTCCCCGATGATGTTGCTGAAGCAATTGTGGATAAGACAATGAAGGAGGTTGACTCAAAAGGAGATGGGAAGATTGATAACGAAGAGTGGAGAGAGTATGTAGCAAAAAATCCTTCTCTTCTGAAGATCATGACTCTACCATATCTAAAGGATATAACTCTGGCATTTCCCAGCTTTATTTTGCACACTGAGGTGGAGGACTAG 627 0.386 MSCFCLKKARPKTKQELNTILASETSFTVNEIEALLCTFKKLSSVDDHFIHKKEFHLALLNNSGKQNLFADRVFDMFDIKRNGVIDFGEFVRSLNVFHPNASEEEKIEFAFKLFDLRQTGFIERHGLKEMVLATLTESDVTVPDDVAEAIVDKTMKEVDSKGDGKIDNEEWREYVAKNPSLLKIMTLPYLKDITLAFPSFILHTEVED* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1285 208 SUPERFAMILY EF-hand 22 200 IPR011992 -
Apr2g1285 208 Pfam EF-hand domain pair 104 174 IPR002048 GO:0005509
Apr2g1285 208 PRINTS Recoverin family signature 13 27 - -
Apr2g1285 208 PRINTS Recoverin family signature 73 94 - -
Apr2g1285 208 PRINTS Recoverin family signature 120 138 - -
Apr2g1285 208 PRINTS Recoverin family signature 166 186 - -
Apr2g1285 208 PANTHER CALCINEURIN B-LIKE PROTEIN 8 1 207 - -
Apr2g1285 208 Gene3D - 19 208 - -
Apr2g1285 208 SMART efh_1 150 178 IPR002048 GO:0005509
Apr2g1285 208 SMART efh_1 106 134 IPR002048 GO:0005509
Apr2g1285 208 SMART efh_1 69 97 IPR002048 GO:0005509
Apr2g1285 208 ProSiteProfiles EF-hand calcium-binding domain profile. 65 100 IPR002048 GO:0005509
Apr2g1285 208 Pfam EF hand 71 92 IPR002048 GO:0005509
Apr2g1285 208 ProSiteProfiles EF-hand calcium-binding domain profile. 102 137 IPR002048 GO:0005509
Apr2g1285 208 ProSiteProfiles EF-hand calcium-binding domain profile. 146 181 IPR002048 GO:0005509
Apr2g1285 208 PANTHER CALCINEURIN B 1 207 IPR045198 GO:0005509|GO:0019722|GO:0019900
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1285 Apr-Chr2 19082710 19084886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1285 1 208 EF-hand Containing Proteins AT4G17615 56.190 3.98e-82 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1285 K06268 - vra:106766823 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1285 2 19082710 19084886 Apr2g1285 2 19082710 19084886 ECH