Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1284 ATGGGGAGTTGTTGCACGAAACAACAACTTGAGCACGAAGATCCAGCAGTTCTTGCTGCCCAAACTTATTTTAATATTTCTGAAATTGAAGCATTGTATGATCTGTTCAAGAAATTAAGCAGCTCCATGGTTGATGACGGGCTTATCAGCAAAGAAGAGTTTCAACTTGGCTTATTTGGAAGCAGCAAGAAACAGAGCCTCTTTGCCGACAGGGTCTTTCATTTATTTGACTCAAAAAACGATGGGGTGATAGAATTTGGAGAGTTTGTTCGAGGTCTGAGCGTCTACCATCCAGCAGCGCCACAAGCACAAAAAGCAGATTTTTCATTTCGACTCTATGATATACGGCAAAGGGGCTTTATTGAACGTGAAGAGGTGAGAGAGATGGTACTGGCATTACTAAGTGAGTCGGATTTGGTTCTGTCTCATGACATAATTGAGGTCATAATTGACAAGACCTTTGAAGAAGCGGACTCAAAAGGAGATGGAAGGATAGATGGGGAGGAGTGGCAAGAGTTTGTGGCTCAAAATCCATCCTTACTCAGGAATATGACCATTCCATATTTGAAGTAA 573 0.4188 MGSCCTKQQLEHEDPAVLAAQTYFNISEIEALYDLFKKLSSSMVDDGLISKEEFQLGLFGSSKKQSLFADRVFHLFDSKNDGVIEFGEFVRGLSVYHPAAPQAQKADFSFRLYDIRQRGFIEREEVREMVLALLSESDLVLSHDIIEVIIDKTFEEADSKGDGRIDGEEWQEFVAQNPSLLRNMTIPYLK* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1284 190 Pfam EF hand 70 91 IPR002048 GO:0005509
Apr2g1284 190 Pfam EF-hand domain pair 107 174 IPR002048 GO:0005509
Apr2g1284 190 PRINTS Recoverin family signature 10 24 - -
Apr2g1284 190 PRINTS Recoverin family signature 72 93 - -
Apr2g1284 190 PRINTS Recoverin family signature 119 137 - -
Apr2g1284 190 PRINTS Recoverin family signature 165 185 - -
Apr2g1284 190 CDD EFh 105 175 IPR002048 GO:0005509
Apr2g1284 190 PANTHER CALCINEURIN B 1 190 IPR045198 GO:0005509|GO:0019722|GO:0019900
Apr2g1284 190 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Apr2g1284 190 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Apr2g1284 190 SMART efh_1 68 96 IPR002048 GO:0005509
Apr2g1284 190 SMART efh_1 105 133 IPR002048 GO:0005509
Apr2g1284 190 SMART efh_1 149 177 IPR002048 GO:0005509
Apr2g1284 190 Gene3D - 14 190 - -
Apr2g1284 190 SUPERFAMILY EF-hand 16 188 IPR011992 -
Apr2g1284 190 PANTHER CALCINEURIN B-LIKE PROTEIN 5 1 190 - -
Apr2g1284 190 ProSiteProfiles EF-hand calcium-binding domain profile. 64 99 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1284 Apr-Chr2 19078738 19080089 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1284 22 190 EF-hand Containing Proteins AT5G24270 63.905 1.58e-80 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1284 K06268 - gmx:100808628 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1284 2 19078738 19080089 Apr2g1284 2 19078738 19080089 ECH