Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1271 ATGGAAAAGGTTGTGAGAGTGATTTGCTTGCTTCCTCTGCTTCTTCTTGTGTGCCCTCCTTTTGCCTATGGTGGACATGACTACGGGCAAGCTCTGAGTAAGAGCATTCTCTTCTTTGAAGCACAGAGATCTGGTTATCTTCCCCATAACCAGAGAGTAACATGGAGAGCTCATTCTGGTTTGCAAGACGGCAAGGCAAGCGGGGTAAATCTAGTTGGAGGGTACTATGATGCAGGGGACAATGTGAAGTTCGGTCTACCCATGGCATTCACCGTGACGATGATGTCATGGAGCATCATAGAATACGGCAAGCAAATGGCTGCTAGTGGTGAACTTAGTCATGCCATGGAAGCTGTCAAATGGGGTACTGACTACTTCATCAAAGCTCACCCTCAACCCAATGTGCTCTACGGAGAGGTGGGAGACGGGAACACTGACCATTACTGTTGGCAAAGGCCAGAGGACATGACCACTGACCGTCATGCTTACAAGATCGATCCAAGCAATCCCGGGTCGGATCTCGCCGGAGAAACTGCCGCCGCCATGGCCGCAGCCTCCATTGTTTTCCGACACTCTAACCCTGCCTATTCCGCCGAACTCCTTCGCCATGCATATCAGTTATTTGATTTTGCGGATAAATACAGAGGCAAATATGACGGCAGCATTACGGTTGCACAGAAGTACTACAGATCCATCAGTGGCTACAATGATGAATTGCTCTGGGCTGCTGCTTGGTTGTATCAAGCATCTAACAATCAATATTACTTGGATTACCTTGGAAGAAATGGTGACTCCATGGGTGGAACTGGTTGGAGCATGACTGAATTTGGTTGGGATGTCAAGTATGCTGGGGTTCAGACATTAGTTGCCAAGTTCCTAATGCAAGGCAAAGCAGGTCATCATGCACCAGTGTTGGAGAGATATCAGCAGAAGGCTGAGTCTTTCATGTGTTCATGCCTTGGAAAGGGTGCTCGCAATGTTCAGAAAACTCCTGGTGGTCTCATCTTCCGCCAGAGATGGAACAACATGCAGTTTGTCACAAGTGCCTCATTTTTAGCCACTGTCTACTCTGACTACCTTGCTTCATCTGGTAAATACTTGAGGTGCTCTTCAGGCAATGTTCCCCCTGCTGAGCTTCTCTCTCTTGCAAACTCTCAGGTGGACTACATTCTTGGGGAGAACCCAAGAGCCACAAGTTACATGGTGGGCTATGGAAGCAACTTCCCCCAAAGAGTTCACCACCGTGGTTCATCCATTGTCTCGATCAAGGTTAACCCTTCATTTGTCAGCTGCCGTGGAGGTTATGCTACTTGGTTTAGCAGCAAAAGGAGCGATCCCAACCTACTTACTGGTGCTTTGGTTGGAGGACCTGATGCATATGATGACTTCGCTGATGAAAGAGATAATTATGAGCAAACAGAGCCAGCAACCTATAACAATGCCCCTCTTATTGGTATTCTAGCACGACTAAGTGGAGGTCATGGTGGTTACAACCAGCTCCTTCCAGTTGTTCCCGTTCCGAACCCTGTTACCAAGCCTCAACCATCCCCCAATCCCAAAATAACTCCAACTCCAGCTTCATGGTCAGGCCCAATTTCCGTTGAGCAGAAAATGACCACCTCATGGGTTGCCGATGGAAGAACTTATTACAGATACTCAACAGTGGTGACTAACAAATCTAACAAGAGTCTAAATTCTATCAATCTTTCAATATCCAAGCTTTATGGTCCAATCTGGGGCCTCACGAAGTCCGGTGATTCATACACATTCCCATCATGGATTAACTCATTATCAGCAGGTAAAAGCCTCGAATTTGTCTACATCCATTCTGCTTCACAAGCCGATGTCTCGGTCGCAAACTATGTATTGGCCTAA 1875 0.4725 MEKVVRVICLLPLLLLVCPPFAYGGHDYGQALSKSILFFEAQRSGYLPHNQRVTWRAHSGLQDGKASGVNLVGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGKQMAASGELSHAMEAVKWGTDYFIKAHPQPNVLYGEVGDGNTDHYCWQRPEDMTTDRHAYKIDPSNPGSDLAGETAAAMAAASIVFRHSNPAYSAELLRHAYQLFDFADKYRGKYDGSITVAQKYYRSISGYNDELLWAAAWLYQASNNQYYLDYLGRNGDSMGGTGWSMTEFGWDVKYAGVQTLVAKFLMQGKAGHHAPVLERYQQKAESFMCSCLGKGARNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASSGKYLRCSSGNVPPAELLSLANSQVDYILGENPRATSYMVGYGSNFPQRVHHRGSSIVSIKVNPSFVSCRGGYATWFSSKRSDPNLLTGALVGGPDAYDDFADERDNYEQTEPATYNNAPLIGILARLSGGHGGYNQLLPVVPVPNPVTKPQPSPNPKITPTPASWSGPISVEQKMTTSWVADGRTYYRYSTVVTNKSNKSLNSINLSISKLYGPIWGLTKSGDSYTFPSWINSLSAGKSLEFVYIHSASQADVSVANYVLA* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1271 624 PANTHER ENDOGLUCANASE 10 590 - -
Apr2g1271 624 Pfam Carbohydrate binding domain CBM49 532 609 IPR019028 GO:0030246
Apr2g1271 624 SMART CBM49_2 532 612 IPR019028 GO:0030246
Apr2g1271 624 Gene3D - 25 493 IPR012341 GO:0005975
Apr2g1271 624 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 463 481 IPR033126 -
Apr2g1271 624 Pfam Glycosyl hydrolase family 9 28 487 IPR001701 GO:0004553|GO:0005975
Apr2g1271 624 PANTHER ENDO-1,4-BETA-GLUCANASE 10 590 - -
Apr2g1271 624 SUPERFAMILY Six-hairpin glycosidases 25 504 IPR008928 GO:0005975
Apr2g1271 624 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 389 415 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1271 Apr-Chr2 18962818 18968520 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1271 18 624 Glycoside Hydrolase AT1G64390 79.572 0.0 1019
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1271 K01179 - gmx:732598 1155.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1271 2 18962818 18968520 Apr2g1271 2 18962818 18968520 ECH