Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1234 ATGGGGCTCATGACCGTGGACCAGACTCAATTATTGTCCAAGATAGCCATCAGCGATGGACATGGTGAAGGATCCCCATACTTTGATGGATGGAAGGCTTATGATGAAGACCCCTTTCATCCCACCAACAATCCTAATGGGGTTATCCAAATGGGTCTTGCAGAGAATCAGCTTACTTCTGATTTCGTTCAAGATTGGATGCTAAGTAACCCCGAGGCCTCTATTTGTACTCCAGAAGGAGTATGGGATTTCAGAGCCATAGCTAATTTTCAGGATTATCATGGTCTACCAGAGTTCAGAAATGCCGTGGCTAAATTCATGGGTAGAACGAGAGGAAATAGAGTGAGTTTTGACCCTGACCGCATTGTGATGAGTGGTGGAGCAACTGGAGCACACGAGGTCACTGCTTTTTGTTTGGCAGACCCTGGTGACGCCTTTTTGGTGCCAATTCCCTATTATCCAGGTTTCGATCGGGATTTGAGGTGGAGAACAGGAGTTAAACTTCTTCCAGTTATGTGTGAAAGCTCTAATAACTTCAAGTTGACAAGGCAAGCATTAGAAAGTGCCTATGAGAAAGCCATAGAGGATAACATAAGAGTAAAGGGCTTGCTTATTACCAATCCATCAAACCCATTAGGCACTGTCATGGACAGAAAAACACTAAGAACTGTGGTGAGTTTCATCAATGAAAAGCGTATCCACCTTGTATGTGATGAAATATATGCTGCAACAGTTTTCAGCCACCCAAGTTTCATAAGCATAGCTGAGATATTAGAGGAAGAAACAGATATTGAATGTGATCATAACCTCATTCACATTGTTTATAGTCTTTCAAAGGATATGGGGTTCCCTGGCTTTAGAGTTGGCATCATATACTCTTACAATGATGCTGTGGTCCATTGTGCACGCAAAATGTCTAGCTTTGGATTAGTGTCAACACAAACTCAGTATCTTTTAGCATCAATGCTATCTGATGATGAGTTTGTGGAAAGGTTCCTTGAAGAGAGTGCCAAGAGGTTAGAAAAAAGGTATAGAGTTTTCACCGGTGGGTTGGCAAAAGTTGGCATAAAGTGTTTGCAAAGTAATGCTGGTCTCTTTGTGTGGATGGATTTGAGACATCTTCTTAAAAAGCCAACACTTGAATCAGAAATGGAGCTGTGGAAAGTGATTATTCATGAAGTTAAGATCAATGTTTCACCTGGTTCTTCTTTTCATTGCACTGAACCAGGGTGGTTTAGGGTGTGCTATGCTAACATGGATGATGATAGGGCTTTGCAAGTTGCTTTGCAAAGAATTCGCACCTTTGTGCTTCAAAATAAGGAGGTTATGGTATCTAATAAGAAACCATGTTGGCAGAGTAACTTGAGGCTTAGCCTCAAATCAAGAAGGTTTGAAGATATCATGATGTCACCTCACTCCCCAATACCTCATTCACCTCTAGTTAAAGCCACAATTTGA 1458 0.4163 MGLMTVDQTQLLSKIAISDGHGEGSPYFDGWKAYDEDPFHPTNNPNGVIQMGLAENQLTSDFVQDWMLSNPEASICTPEGVWDFRAIANFQDYHGLPEFRNAVAKFMGRTRGNRVSFDPDRIVMSGGATGAHEVTAFCLADPGDAFLVPIPYYPGFDRDLRWRTGVKLLPVMCESSNNFKLTRQALESAYEKAIEDNIRVKGLLITNPSNPLGTVMDRKTLRTVVSFINEKRIHLVCDEIYAATVFSHPSFISIAEILEEETDIECDHNLIHIVYSLSKDMGFPGFRVGIIYSYNDAVVHCARKMSSFGLVSTQTQYLLASMLSDDEFVERFLEESAKRLEKRYRVFTGGLAKVGIKCLQSNAGLFVWMDLRHLLKKPTLESEMELWKVIIHEVKINVSPGSSFHCTEPGWFRVCYANMDDDRALQVALQRIRTFVLQNKEVMVSNKKPCWQSNLRLSLKSRRFEDIMMSPHSPIPHSPLVKATI* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1234 485 Gene3D - 71 325 IPR015421 GO:0003824
Apr2g1234 485 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 3 447 - -
Apr2g1234 485 SUPERFAMILY PLP-dependent transferases 21 436 IPR015424 -
Apr2g1234 485 CDD AAT_like 89 433 - -
Apr2g1234 485 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 276 289 IPR004838 GO:0003824|GO:0009058|GO:0030170
Apr2g1234 485 Gene3D Aspartate Aminotransferase, domain 1 37 431 IPR015422 GO:0003824
Apr2g1234 485 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 3 447 - -
Apr2g1234 485 Pfam Aminotransferase class I and II 49 428 IPR004839 GO:0009058|GO:0030170
Apr2g1234 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 51 77 - -
Apr2g1234 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 84 100 - -
Apr2g1234 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 121 141 - -
Apr2g1234 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 143 164 - -
Apr2g1234 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 197 221 - -
Apr2g1234 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 233 256 - -
Apr2g1234 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 270 294 - -
Apr2g1234 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 302 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1234 Apr-Chr2 18578287 18581908 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1234 K20772 - gmx:547976 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1234 2 18578287 18581908 Apr2g1234 2 18578287 18581908 ECH
Apr7g0571 7 12158907 12161823 Apr2g1234 2 18578287 18581908 PCT