Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1227 ATGGATGTGTTATTATTATCATTATTTGCACTCTTGGTTGTTTTGCCAAGCCTGACAACAGTTGAGAGCCGCAAAGCACCAGTTCTGGACTATTTTGATTACGGCTCCGTGAGCTGCAGAGCTTACAGTGCCTCACTGATAGAGTTTGGAGGGGTTGGTGATGGAACAACTTTGAACACAAAAGCCTTTCAGACAGCTATAGATTATTTGAGCCAATATGCATCAAATGGTGGGTCTCAACTTTATCTTCCCCCAGGAAGATGGTTAACTGGTAGTTTCAATGTCACAAGCCATTTCACTTTATTCCTACACAAGGATGCTGTAATTCTTGGTTCTCAGGATGAATGTGACTGGCCAGTGATTGATCCCTTGCCATCTTATGGTAGAGGGAGGGATACCCAAGGTGGAAGGTTTAGCAGTCTAATTTTTGGAACCAACCTCACTGATGTAGTCATAACTGGGGGTAATGGAACAATAGATGGACAAGGTGACTTATGGTGGCAAAAATTCCACAATGGACAGCTCAATTATACCAGGCCTTACCTAATTGAAATCATGTACTCAGATAATGTTCAGATATCCAATCTCACTTTGGTTAATTCTCCATCGTGGAATGTCCATCCTGTATATAGCAGCAACGTTATTGTTCCAGGAATCACAATTCTAGCTCCTGTGACATCCCCGAATACAGATGGAATCAACCCTGACTCGTGCACAAACACGCGAATTGAGGATTGTTATATTGTATCGGGAGATGATTGTGTGGCTGTGAAGAGTGGTTGGGATGAGTATGGTATAGCTTTTGGAATGCCAACTAAACAGCTGGTAATCAGAAGGCTCACTTGTATTTCTCCATTCAGTGCTGTGATTGCTTTAGGGAGTGAAATGTCTGGTGGGATTCAGGATGTGAGAGCTGAAGACATTATAGCCATCAATACAGAATCAGGGGTGAGGATCAAAACTGCTGTAGGAAGAGGAGGCTACGTGAAGGACATATATGTTAGAAGAATGACTATGATAACCATGAAATGGGCATTTTGGATGACTGGAAATTATGGGTCTCATGCTGATGATAACTATGATCCCAATGCACTTCCTCTGATTCAGAATATTAATTATCGCGATATGGTAGCTGAGAATGTCACTATGGCAGCAAGATTAGAGGGTATATCTGGTGATCCATTTACTGGAATCTGCATATCCAATGTAACCATTCAACTGGCAAAGAAGGCTAAAAAGGTTCCATGGAATTGCACTGATATTGCTGGGATTTCAAGTGGTGTGACTCCTCTGCCATGTGATTTGTTGCCAGATCAAGGATTAGATAAGATTGGGGCATGTACCTTCCCAGAAGAAACTTTGCCCATAGAAGATATCAAGGTTCAAACGTGCACTTACAGAAGGAATTTATGA 1413 0.419 MDVLLLSLFALLVVLPSLTTVESRKAPVLDYFDYGSVSCRAYSASLIEFGGVGDGTTLNTKAFQTAIDYLSQYASNGGSQLYLPPGRWLTGSFNVTSHFTLFLHKDAVILGSQDECDWPVIDPLPSYGRGRDTQGGRFSSLIFGTNLTDVVITGGNGTIDGQGDLWWQKFHNGQLNYTRPYLIEIMYSDNVQISNLTLVNSPSWNVHPVYSSNVIVPGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAFGMPTKQLVIRRLTCISPFSAVIALGSEMSGGIQDVRAEDIIAINTESGVRIKTAVGRGGYVKDIYVRRMTMITMKWAFWMTGNYGSHADDNYDPNALPLIQNINYRDMVAENVTMAARLEGISGDPFTGICISNVTIQLAKKAKKVPWNCTDIAGISSGVTPLPCDLLPDQGLDKIGACTFPEETLPIEDIKVQTCTYRRNL* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1227 470 SUPERFAMILY Pectin lyase-like 36 436 IPR011050 -
Apr2g1227 470 Gene3D - 36 425 IPR012334 -
Apr2g1227 470 Pfam Glycosyl hydrolases family 28 140 413 IPR000743 GO:0004650|GO:0005975
Apr2g1227 470 PANTHER PECTIN LYASE-RELATED 8 467 - -
Apr2g1227 470 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 8 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1227 Apr-Chr2 18499314 18501682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1227 32 468 Glycoside Hydrolase AT4G23500 74.371 0.0 698
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1227 - - gmx:100785841 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1227 2 18499314 18501682 Apr2g1227 2 18499314 18501682 ECH