Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1206 ATGGCGTTATCATATGTTTCTCTTCCACACTTGCTTTGTGCGACAACGCCATCGAACCCAAACTCCATCACTGTAAAATTCAAACACTGTCGCAAAGCTTTGACTTCTACTTCCTCACCACTCTTCTTCCGTTCCATTCCGAATCCATTTTTCAACGTTCGAGTTCCGCGGGCCATTGGGCCTGATGGCAAGTTTTACCCAAGCCCGGCCGACGACGACCCACCGGAGGCAGCTGAAGATTCCTCTCACGGCTTCTCCACGTTCCAGCAAATTCAGCGCCAAGCCGACCGCGCGCGCCAACTTCAAGAAGAAGATTTCAAGAAGAACCAATCCACTTACCTTGCGGCCATCGCCGACGTCGAAGATGCTCCCGACGGGGAAGCTCCCGACGACTCACCCGCGGAGGATTTGTTCGGCGAAATCGACAAAGCCATCGCGCTCAAGCGCAAAGAGTTCGTTCGCCAGGGGCTTCTCGAACCTAATCCCAGGAAAGAGCAACAACTCTCCGTCGCCGTCGGCGAAGACCTTCAACCTGAGGAGGTCGTTGATTTGGAGGAGATTGAACGCCTCCAGGGACTCACAGTTCTTTCCGACGATATTCCCGGCGAATTCGACGACGGAGGAAACGGAAATGGAGGTATGAAACCTGCGTCTCCATTCGAAATTGATTTTGAAAGTTACGGAAAAAGTAGGGCTAGGATTGTGGAAGCTAGGTTTAGGATGAGTTTGGCTGAGCTTTTAGATGAGAGTAAGGTGGTGCCCGTCTCTGTGTATGGTGATTTGGAAGTTGAAATCACTGGGATTCAGCACGATTCTAGGATTGTTACTGCTGGTGATTTGTTTGTTTGTTGTGTTGGGCAAAAAACCGATGGGCATTTGTTTTTGTCTGAGGCTGATAAGAGAGGTGCAGTTGCTGTTGTAGCTAGTAAAGAGATCGACATTGAGGATACTTTGGGTTGCAAGGCTTTGGTTATTGTGGAAGATACTAATGCTGTTCTTCCTGCCTTGGCTGCGTCGTTTTACAAGTATCCTTCCAAGAACATGGCTGTTATTGGGATAACTGGGACTTATGGCAAAACGACTACCACCTATTTGATCAAAAGCATGTATGAAGCGATGGGGCTGCGCACTGGGATGTTTAACTCGGTTGCTTCTTATGTTCATGGGGATAATAAATTGGACTTGCCTAACATGGCCCCTGATGCTGTTTTGGTTCAGAATTTGATGGCAAAAATGCTTCATAATGGAACTGAGGCAGTGGTCATGGAGGCAGCTTCTCATGGGTTGGGTCAGGGAAAGTACGAGGAGGTTGATTTTGATATTGCGATTTTCACTAATTTGAGTCAGGAGGGTGATGGAGAAGCACAGGCTAAACTGTTCTCGAGAATGGTGGATCCTGAGCGGCACAGGAAGGTTGTTAACATTGATGATCCCAGTGCACAGCTGTTCATGTCACAGGGGAATCCAGGAGTTCCGGTTGTGACATTCGCCTTGGAAAATAAGAACGCAGATGTTCATCCCTTGAAGTTTGAACTCTCCCTGTTTGAGACACAGGTGTTGGTTAATACACCCACGGGGATACTTGAAATTTCATCGGGTTTGCTTGGAAAGCATAATATTTACAACATTCTTGCTGCTGTGGCAGTTGGCATTGCTGTTGGTGCACCCTTAGAGGACATTGTTAGAGGGATTGAAGAGGTTGATGCAGTTCCTGGCAGGTGTGAGTTGATTGATGAGGAACAAGCTTTTGGGGTGATAGTGGACTATGCTAGTAGTCCTGATGCATTATCTAGGTTGCTTGATTCTGTAAGGGAGCTTGGACCTCGCAGGATTATAACTGTCATTGGTTGCTGTGGTGAGGATGACAGGGGGAAGAGACCTGTCATGACCAAGATAGCAACAGAAAAAAGTGAAGTGACTATGCTGACATCTGACAATCCCAAGAATGAAGATCCTTTGGATATATTGGATGATATGTTAGCTGGGGTAGGATGGACAATGCAGGACTACCTGAAATATGGAGAGAATGACTACTATCCACCTCTTCCAAATGGTAATAGGCTTTTTCTCCACGACATTAGGAGGGTAGCTGTGCGAGCTGCAGTTGCAATGGGAGAGGAGGGGGATGTGGTTGTTGTCGCTGGCAAAGGCCATGAAACATATCAAATAGAAGGTGATAAGAACGATTTCTTTGATGATCGAGAAGAGTGCCGAGAGGCATTGCAGTATGTCGATGAGCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGCGGTTACCAGAGAGTCATTGA 2298 0.4726 MALSYVSLPHLLCATTPSNPNSITVKFKHCRKALTSTSSPLFFRSIPNPFFNVRVPRAIGPDGKFYPSPADDDPPEAAEDSSHGFSTFQQIQRQADRARQLQEEDFKKNQSTYLAAIADVEDAPDGEAPDDSPAEDLFGEIDKAIALKRKEFVRQGLLEPNPRKEQQLSVAVGEDLQPEEVVDLEEIERLQGLTVLSDDIPGEFDDGGNGNGGMKPASPFEIDFESYGKSRARIVEARFRMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRIVTAGDLFVCCVGQKTDGHLFLSEADKRGAVAVVASKEIDIEDTLGCKALVIVEDTNAVLPALAASFYKYPSKNMAVIGITGTYGKTTTTYLIKSMYEAMGLRTGMFNSVASYVHGDNKLDLPNMAPDAVLVQNLMAKMLHNGTEAVVMEAASHGLGQGKYEEVDFDIAIFTNLSQEGDGEAQAKLFSRMVDPERHRKVVNIDDPSAQLFMSQGNPGVPVVTFALENKNADVHPLKFELSLFETQVLVNTPTGILEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYASSPDALSRLLDSVRELGPRRIITVIGCCGEDDRGKRPVMTKIATEKSEVTMLTSDNPKNEDPLDILDDMLAGVGWTMQDYLKYGENDYYPPLPNGNRLFLHDIRRVAVRAAVAMGEEGDVVVVAGKGHETYQIEGDKNDFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1206 765 Gene3D - 344 573 IPR036565 GO:0005524|GO:0009058
Apr2g1206 765 PANTHER MUR LIGASE FAMILY MEMBER 220 755 - -
Apr2g1206 765 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 241 741 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Apr2g1206 765 MobiDBLite consensus disorder prediction 62 85 - -
Apr2g1206 765 SUPERFAMILY MurD-like peptide ligases, catalytic domain 344 567 IPR036565 GO:0005524|GO:0009058
Apr2g1206 765 Pfam Mur ligase middle domain 353 549 IPR013221 GO:0005524|GO:0009058|GO:0016881
Apr2g1206 765 Pfam Mur ligase family, glutamate ligase domain 570 653 IPR004101 GO:0009058|GO:0016881
Apr2g1206 765 TIGRFAM murE: UDP-N-acetylmuramyl-tripeptide synthetase 263 742 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Apr2g1206 765 Gene3D - 575 752 IPR036615 GO:0009058|GO:0016881
Apr2g1206 765 Gene3D - 242 342 - -
Apr2g1206 765 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 570 742 IPR036615 GO:0009058|GO:0016881
Apr2g1206 765 Pfam Mur ligase family, catalytic domain 264 341 IPR000713 GO:0009058|GO:0016881
Apr2g1206 765 PANTHER UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE MURE HOMOLOG, CHLOROPLASTIC 220 755 - -
Apr2g1206 765 SUPERFAMILY MurE/MurF N-terminal domain 242 344 IPR035911 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1206 - - gmx:100776096 1210.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1206 2 18246689 18250790 Apr2g1206 2 18246689 18250790 ECH