LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr2g1197	ATGGGGAATCGACGCTTCACTCAGGTGGCAACCAGCGACGACGAAGACGAAGCACGGCCTCGTCCAGCAACTGCCACCGAAGAGAACCGTTCTAAGCAGCGGAAGAGGAAGAGGATGAAGCTGCAAGAGGAAGATGAAGAAGAAGAAGAGGAAGAGAAGAATGAGGAAGACAAAAAAAAGAAGAGGAAACCCAAAGATAAGGAAGACGAAGAAGAGGAACCGCCACAGGAGGACGCTAAGCCCATTGGCGATCCAGTTAGGGTTTCCGGAAAAGGAAGAGGCCGCAGAAAGCATTTTGAATCCTTTGAGTTCGATGGAAACCAATACACGTTGGAGGACCCTGTACTTCTCGTGCCTGAGGACAAAGAGCAAAAGCCGTACGTGGCAATTATTAAGGACATTACACAATCACAAAATGGCAGCATGATGGTCACAGGGCAGTGGTTTTATCGTCCTGAAGAAGCAGAAAGAAAAGGTGGTGGCAGCTGGCAATCACGTGATACAAGGGAGCTGTTTTATAGTTTCCACCGAGACGAGGTTCCTGCAGAATCAGTTATGCATAAGTGTGTTGTGCATTTCGTTCCGATACACAAACAGCTTCCAAATCGTAAGCAGCATCCTGGGTTTATTGTGCAAAAGGTGTATGACACGGTAGAAAGGAAACTCTGGAGGCTAACTGATAAGGACTATGAGGACAATAAACAGCAAGAAATTGATGAGCTTGTTCAGAAAACTCTTCAACGTTTGGGCACACTACCTGACATTGAGCCTGAGGAAGCTATTACTGATCAGGAAGATCTGATGAAAAATAAAAGAATCTTAAGGAAAAAGAGCATTTCACCTCTTGATGTTTCAAGGGAGGAGGAAACAACTTATAAGGCTGACCAACCTCTGAAGCCTGAAACACCTGGGAGTTGTGTAAATAATGTCTCACAGCATTATCGCATATTAGAGGATTTCAATGTACTAACAGGAGATACCCATCGCGACAGAGGTTTAGAGAAGCTGCTTCAAAGTGTTCAATGCTTGTTTACTTCTGATGACAGCATAAAAAAGGAAGACAAAGGAAATGAAAGTTCTGATGCAATCAACAATGGAAGCAATAAATTAGCAAATGAATGTAAAGACAAGGTTCTGAAGAGTTCCAAGTCTTTTGTCTGGCCAGATGTTGCTGTTCCAGCTGTAGTTGCTCTAGAAAAAGCTTCGCATGAGACTTTTTCATCAGATTATCAGAAGTATAACCAAAAGCTACGACAATTAGTATTTAACCTCAAGCACAATGCATTGCTAGCACGCCGTTTATTAAATGGAGAGTTGGAGCCTTCTAAAATATTGAATATGACACCCAATGAATTAAAGGAGGGTTTGACTGCTGAGGAAACATCCAAGAAGGAGCCCGTTGAGTCACAGCCCATGCAGATGACTGATGCCCGCTGTTCTATATGCATGGAGTGTAAAGTGGGCTTGAAAGATATTATCCATGCAGGACGCAGTGACCGATATACGCTGGAATGTATGGCCTGTGGTTATTCCTGGTTTGCCTCCCGTGATGAGGTGTCTGTGCTGACTATAGAGGCATCAGATTCAAAAAGAAGTGTAGGCACGGCGCCATGGGCCACCGCAAAATTTGAAGATGTTGAAAAGAAGCTGGTGAGTCCCCGTGAATCTGAAAAGTCGGCGAATGACATCTTTAAGAAAACAAGTGAAGCATATATGCCAGTTTTGGATGCCCAGAAATCATTTGGCAAGTCCAGGAAAGATGAAAACGTCGAAGCTTCAAGACATGCTGATTAG	1794	0.4392	MGNRRFTQVATSDDEDEARPRPATATEENRSKQRKRKRMKLQEEDEEEEEEEKNEEDKKKKRKPKDKEDEEEEPPQEDAKPIGDPVRVSGKGRGRRKHFESFEFDGNQYTLEDPVLLVPEDKEQKPYVAIIKDITQSQNGSMMVTGQWFYRPEEAERKGGGSWQSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQLPNRKQHPGFIVQKVYDTVERKLWRLTDKDYEDNKQQEIDELVQKTLQRLGTLPDIEPEEAITDQEDLMKNKRILRKKSISPLDVSREEETTYKADQPLKPETPGSCVNNVSQHYRILEDFNVLTGDTHRDRGLEKLLQSVQCLFTSDDSIKKEDKGNESSDAINNGSNKLANECKDKVLKSSKSFVWPDVAVPAVVALEKASHETFSSDYQKYNQKLRQLVFNLKHNALLARRLLNGELEPSKILNMTPNELKEGLTAEETSKKEPVESQPMQMTDARCSICMECKVGLKDIIHAGRSDRYTLECMACGYSWFASRDEVSVLTIEASDSKRSVGTAPWATAKFEDVEKKLVSPRESEKSANDIFKKTSEAYMPVLDAQKSFGKSRKDENVEASRHAD*	598

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr2g1197	597	Gene3D	-	12	215	IPR043151	-
	Apr2g1197	597	MobiDBLite	consensus disorder prediction	9	43	-	-
	Apr2g1197	597	MobiDBLite	consensus disorder prediction	1	94	-	-
	Apr2g1197	597	ProSiteProfiles	TFIIS central domain profile.	328	480	IPR003618	GO:0006351
	Apr2g1197	597	Coils	Coil	29	62	-	-
	Apr2g1197	597	Gene3D	-	318	454	IPR036575	GO:0006351
	Apr2g1197	597	Pfam	Transcription factor S-II (TFIIS), central domain	324	466	IPR003618	GO:0006351
	Apr2g1197	597	SMART	BAH_4	107	226	IPR001025	GO:0003682
	Apr2g1197	597	MobiDBLite	consensus disorder prediction	54	70	-	-
	Apr2g1197	597	MobiDBLite	consensus disorder prediction	578	597	-	-
	Apr2g1197	597	ProSiteProfiles	BAH domain profile.	107	226	IPR001025	GO:0003682
	Apr2g1197	597	SUPERFAMILY	Elongation factor TFIIS domain 2	387	453	IPR036575	GO:0006351
	Apr2g1197	597	SMART	mid_6	361	462	IPR003618	GO:0006351
	Apr2g1197	597	CDD	BAH_plant_3	89	235	-	-
	Apr2g1197	597	PANTHER	BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN	1	593	-	-
	Apr2g1197	597	PANTHER	BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN	1	593	-	-
	Apr2g1197	597	Pfam	BAH domain	108	222	IPR001025	GO:0003682
	Apr2g1197	597	MobiDBLite	consensus disorder prediction	284	305	-	-
	Apr2g1197	597	MobiDBLite	consensus disorder prediction	580	597	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr2g1197	Apr-Chr2	18173419	18178972	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr2g1197	-		-	gmx:100787670	948.347

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr2g1197	2	18173419	18178972	Apr2g1197	2	18173419	18178972	ECH