Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1169 ATGAAAAAATTCTCTATCTTCCTCCTCATCGCTGTAAGTTGCATGACAGGCTTGAGCCATGCAGCCACATTCGACATCACAAACAAATGCACCTACACGGTGTGGGCTGCGGCCGTGCCCACCGGCGGCGGCAAACAACTAAACCCCGGCGAAAGCTGGGGAATTAACGTGGCGGCAGGCACGGCCGGAGCACGCATCTGGGCTCGAACGAACTGCAATTTCGACGGGTCAGGGCGTGGACATTGCCAAACGGGGGATTGTGGCGGCGCTCTCCAATGCACAGCATATGGCACACCACCAAACACGCTCGCGGAGTTCGCTTTAAACCAATATAACAACCTCGACTTCTACGACATTTCGCTTGTGGACGGTTTCAATGTTCCGATGGAGTTCAGTCCAACTTCGAATGGGTGCACCCGCGCGATTAGTTGCACTGCTGACATCAACGGTCAGTGCCCAAGCGTGCTCAAGGCGGATGGCGGTTGTAACAACCCCTGCACGGTTTTCAAGACTGATGAATATTGTTGCAATTCTGGTAGTTGTGGACCCACCGATTATTCCAAGTTCTTCAAGGACAGGTGTCGAGATGCTTATAGTTATCCTAAGGACGATGCATCCAGCACGTTTACATGCCCCGGTGGAACCAACTACAGGGTTGTGTTTTGCCCTTGA 672 0.5283 MKKFSIFLLIAVSCMTGLSHAATFDITNKCTYTVWAAAVPTGGGKQLNPGESWGINVAAGTAGARIWARTNCNFDGSGRGHCQTGDCGGALQCTAYGTPPNTLAEFALNQYNNLDFYDISLVDGFNVPMEFSPTSNGCTRAISCTADINGQCPSVLKADGGCNNPCTVFKTDEYCCNSGSCGPTDYSKFFKDRCRDAYSYPKDDASSTFTCPGGTNYRVVFCP* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1169 223 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Apr2g1169 223 PRINTS Pathogenesis-related protein signature 43 52 IPR001938 -
Apr2g1169 223 PRINTS Pathogenesis-related protein signature 65 76 IPR001938 -
Apr2g1169 223 PRINTS Pathogenesis-related protein signature 78 107 IPR001938 -
Apr2g1169 223 PRINTS Pathogenesis-related protein signature 115 131 IPR001938 -
Apr2g1169 223 PRINTS Pathogenesis-related protein signature 213 222 IPR001938 -
Apr2g1169 223 ProSitePatterns Thaumatin family signature. 78 93 IPR017949 -
Apr2g1169 223 ProSiteProfiles Thaumatin family profile. 21 223 IPR001938 -
Apr2g1169 223 PIRSF PR5 1 223 IPR001938 -
Apr2g1169 223 SMART tha2 24 223 IPR001938 -
Apr2g1169 223 PANTHER OS03G0233200 PROTEIN 4 223 IPR001938 -
Apr2g1169 223 Gene3D Thaumatin 22 223 IPR037176 -
Apr2g1169 223 SUPERFAMILY Osmotin, thaumatin-like protein 21 223 IPR037176 -
Apr2g1169 223 Pfam Thaumatin family 28 223 IPR001938 -
Apr2g1169 223 PANTHER THAUMATIN-RELATED 4 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1169 Apr-Chr2 17937576 17938265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1169 6 223 Receptor kinase-like Gene Family AT5G38280 38.525 1.41e-42 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1169 - - gmx:100804547 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1169 2 17937576 17938265 Apr2g1169 2 17937576 17938265 ECH