Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1158 ATGGACCTTATTCATAAATTCCTGAACTTAGTTGCTCCTCCAACCACCTTCTTTTCCCTCTGCCTCCTCTTACCACCTTATTGGACTTTCAAGTTCTTCCTTTCCTTCATTAATTCAATCTTTTCTGAAAATGTTGCTGGTAAAGTTGTTCACATCACAGGTGCTTCCTCTGGTATTGGCGAGCATTTGGCGTACGAGTATGCTAGAAGAGGTGCTCGCTTAGCACTTTCTGCAAGGAGGGAGACTGCACTACGAGAAGTTGCTGATAAAGCGCGTGATTGTGGATCTCCTGATGTTATTATAATGCGTGCAGATGTTTCTAAGGTTGAAGATTGTAGCCGATTGGTCGATGAAACTGTGAATCATTTTGGAAGATTGGACCATTTGGTAAATAATGCCGCAATCAGCGTTGCCACCTTGTTTGAAGATGCAGATGATATCACCAATTTGAGACCTATAATGGAAACAAACTTTTGGGGATCAGTTTACACAACCCGTTTTGCTTTACCGCACCTGAGAAAGAGCAGAGGTAAGATAGTGGCCATGTCATCAGCTGATTCTTGGATGCCAGCACCCAGAAGGAACGTGTACAATGCAAGCAAAGCAGCATTGGTGAGTATGTATGAAACATTGAGGGTAGAAGTTGGGTCCCAAGTTGGTATAACAATCGTGACACCCGGTTACGTAGAATCTGAAATGACCAAAGGGAAGTTCTTATTGAAAGAAGGCAAGATGGACGTGGACCAAGATTTAAGAGATGTGGAAGTGAGCGCAGTGGCAGTAGAGTCGGTGAGTGAGTGTGCCAAAGCCATAGTCAGTAGCACGTTGAGGGGAGATAGGTACCTAACGGTACCTGCGTGGTTCAGAATGACGTACGTGATAAAAATGTTGTGTCCAGAGATAGTGGAGTGGAGCTTCAGAATGTTGTATTTGACAGAATCAAGAACTACACCTGCAAGGGAAGCCCCCAGCAAAAAGATATTGGATGCCACTGGTGCCAAGAAGCTTCTTTATCCCTCTTCAATCCAATCTCCTGATGTCAAGATTGAGTGA 1053 0.4416 MDLIHKFLNLVAPPTTFFSLCLLLPPYWTFKFFLSFINSIFSENVAGKVVHITGASSGIGEHLAYEYARRGARLALSARRETALREVADKARDCGSPDVIIMRADVSKVEDCSRLVDETVNHFGRLDHLVNNAAISVATLFEDADDITNLRPIMETNFWGSVYTTRFALPHLRKSRGKIVAMSSADSWMPAPRRNVYNASKAALVSMYETLRVEVGSQVGITIVTPGYVESEMTKGKFLLKEGKMDVDQDLRDVEVSAVAVESVSECAKAIVSSTLRGDRYLTVPAWFRMTYVIKMLCPEIVEWSFRMLYLTESRTTPAREAPSKKILDATGAKKLLYPSSIQSPDVKIE* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1158 350 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Apr2g1158 350 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Apr2g1158 350 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Apr2g1158 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 44 311 IPR036291 -
Apr2g1158 350 Gene3D - 36 316 - -
Apr2g1158 350 PANTHER RETINOL DEHYDROGENASE-RELATED 1 342 - -
Apr2g1158 350 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Apr2g1158 350 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Apr2g1158 350 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Apr2g1158 350 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Apr2g1158 350 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Apr2g1158 350 PRINTS Glucose/ribitol dehydrogenase family signature 217 234 IPR002347 -
Apr2g1158 350 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 1 342 - -
Apr2g1158 350 Pfam short chain dehydrogenase 48 236 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1158 Apr-Chr2 17832551 17835066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1158 43 234 Acyl Lipid Metabolism Gene Families AT1G24360 29.231 2.87e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1158 K22418 - pvy:116105445 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1158 2 17832551 17835066 Apr2g1158 2 17832551 17835066 ECH