Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1110 ATGTCTGGGGCAGGGCAAGCCATAGACATGGAGCACGTGGGGTTTCCGAAAGCGAAATCAGCGGCGGCGGCGGCTGCTGCTCCGGCCGCCGATCACGGCCGAGGGAAGAAAACGGGTCCGGTGTCGATGGATCACGTGCTTCTGGCGTTGCGTGAGACAAAGGAAGAAAGGGATCTTCGTATTCGGAGTCTCTTCAATTTTTTTGATGCTGGCAACACTGGGTATTTGGATTATGCACACATTGAGGCTGGTTTGTCTGCACTTCAGATACCTCCTGAGTATAAATATGCTAAGGAACTGTTCAAAGTGTGTGATGCTGATAAGGATGGAAGGATTGATTACCATGATTTTAGGCGTTATATGGATGACAAGGAATTGGAGCTTTACCGCATATTTCAGGCTATTGATGTGGAACACAATGGCTGCATTCTCCCTGAAGAGCTTTGGGATGCACTTGTCAAGGCTGGGATTGAAATTGATGAGGAGGAGCTTGCTCGCTTTGTGGAGCATGTTGATAAGGATAATAATGGAATTATCACTTTTGAAGAATGGAGAGATTTTCTTCTACTTTACCCTCATGAAGCAACTATTGAAAATATATATCAGCATTGGGGGAGGGTGTGCCTTGTTGATATTGGAGAACAAGCTGTGATTCCTGAAGGTATCAGCAAGCATGTACACAGGAGCAGATACTTTATAGCAGGGGGCATAGCAGGAGCTGCTTCTCGTACAGCAACTGCTCCTCTTGATCGTCTGAAGGTGGTCTTACAAGTTCAGACTGGGCGTGCTTCTATTATGCCAGCAGTGATGAAGATATGGCAACAAGATGGTTTATTAGGGTTTTTCCGAGGTAATGGATTGAATGTTGTTAAGGTAGCTCCAGAGAGTGCTATCAAGTTTTATGCTTATGAAATGCTGAAAAATGCAATTGGGGGTGATCAAGAGAACAAGTCAGATATTGGTACTGCTGGAAGACTTTTTGCTGGTGGTATGGCTGGTGCAGTTGCACAGATTGCTATCTATCCATTGGATCTTGTCAAAACTCGGCTGCAGACTTGTGCTTCTGATGGGGGAAGGGTTCCTAAGCTTGGCACACTTACAAAGGATATATGGGTCCAAGAGGGACCTCGGGCTTTCTACAGAGGGCTTGTTCCATCTCTTCTTGAACCTGGTCCTCTGGTACAACTTGGATGTGGGACAGTTTCAGGGGCTCTTGGAGCTACTTGTGTCTATCCACTGCAGGTTATTCGTACAAGACTGCAGGCACAACCTACCAACACTTCTTGTGGATACAAGGGAATGTCTGATGTATTTTGGAAAACTCTTAAGGAAGAAGGCTTTAGAGGCTTCTACAAGGGACTCATTCCGAATCTCCTCAAAGTTGTGCCAGCTGCAAGCATTACTTACATGGTTTATGAAAGTATGAAGAAGAGTCTTGATCTTGGTTAG 1449 0.4562 MSGAGQAIDMEHVGFPKAKSAAAAAAAPAADHGRGKKTGPVSMDHVLLALRETKEERDLRIRSLFNFFDAGNTGYLDYAHIEAGLSALQIPPEYKYAKELFKVCDADKDGRIDYHDFRRYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIEIDEEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYQHWGRVCLVDIGEQAVIPEGISKHVHRSRYFIAGGIAGAASRTATAPLDRLKVVLQVQTGRASIMPAVMKIWQQDGLLGFFRGNGLNVVKVAPESAIKFYAYEMLKNAIGGDQENKSDIGTAGRLFAGGMAGAVAQIAIYPLDLVKTRLQTCASDGGRVPKLGTLTKDIWVQEGPRAFYRGLVPSLLEPGPLVQLGCGTVSGALGATCVYPLQVIRTRLQAQPTNTSCGYKGMSDVFWKTLKEEGFRGFYKGLIPNLLKVVPAASITYMVYESMKKSLDLG* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1110 482 ProSiteProfiles EF-hand calcium-binding domain profile. 159 194 IPR002048 GO:0005509
Apr2g1110 482 Gene3D - 139 214 - -
Apr2g1110 482 ProSiteProfiles EF-hand calcium-binding domain profile. 56 91 IPR002048 GO:0005509
Apr2g1110 482 Pfam EF-hand domain pair 127 186 IPR002048 GO:0005509
Apr2g1110 482 Pfam EF-hand domain pair 98 123 IPR002048 GO:0005509
Apr2g1110 482 SUPERFAMILY EF-hand 46 224 IPR011992 -
Apr2g1110 482 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 69 388 - -
Apr2g1110 482 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 389 478 - -
Apr2g1110 482 ProSiteProfiles EF-hand calcium-binding domain profile. 92 127 IPR002048 GO:0005509
Apr2g1110 482 SUPERFAMILY Mitochondrial carrier 225 473 IPR023395 -
Apr2g1110 482 Gene3D Mitochondrial carrier domain 222 480 IPR023395 -
Apr2g1110 482 PANTHER SOLUTE CARRIER FAMILY 25 389 478 - -
Apr2g1110 482 PANTHER SOLUTE CARRIER FAMILY 25 69 388 - -
Apr2g1110 482 SMART efh_1 127 155 IPR002048 GO:0005509
Apr2g1110 482 SMART efh_1 60 88 IPR002048 GO:0005509
Apr2g1110 482 SMART efh_1 96 124 IPR002048 GO:0005509
Apr2g1110 482 SMART efh_1 163 191 IPR002048 GO:0005509
Apr2g1110 482 Gene3D - 19 128 - -
Apr2g1110 482 PRINTS Mitochondrial carrier protein signature 231 244 IPR002067 GO:0055085
Apr2g1110 482 PRINTS Mitochondrial carrier protein signature 244 258 IPR002067 GO:0055085
Apr2g1110 482 PRINTS Mitochondrial carrier protein signature 284 304 IPR002067 GO:0055085
Apr2g1110 482 PRINTS Mitochondrial carrier protein signature 335 353 IPR002067 GO:0055085
Apr2g1110 482 ProSiteProfiles EF-hand calcium-binding domain profile. 128 158 IPR002048 GO:0005509
Apr2g1110 482 Pfam Mitochondrial carrier protein 392 479 IPR018108 -
Apr2g1110 482 Pfam Mitochondrial carrier protein 319 388 IPR018108 -
Apr2g1110 482 Pfam Mitochondrial carrier protein 229 311 IPR018108 -
Apr2g1110 482 ProSiteProfiles Solute carrier (Solcar) repeat profile. 226 309 IPR018108 -
Apr2g1110 482 ProSiteProfiles Solute carrier (Solcar) repeat profile. 390 478 IPR018108 -
Apr2g1110 482 ProSitePatterns EF-hand calcium-binding domain. 105 117 IPR018247 -
Apr2g1110 482 ProSitePatterns EF-hand calcium-binding domain. 172 184 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1110 Apr-Chr2 17400350 17403745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1110 12 481 EF-hand Containing Proteins AT5G51050 72.200 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1110 K14684 - gmx:100791305 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1110 2 17400350 17403745 Apr2g1110 2 17400350 17403745 ECH