Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0514 ATGAGCGGAACAACACTCTCACCGCAAATTCCAAACCAGTGTTTCAAACCCTCAAACAGAACCAGATTCCCCACACTTTCCCAAATCGAATTCATCTCTTTCCGCCACCAACACCACAACCACAATCTCCCACTCCTCTGTTCCGCTTCCAACCCCTCCTCATCATCGCCGCCACTAGTGGTTATTGGTTCCGCCAACGCCGACATCTACGTCGAGATCGATCGGCTTCCGCGCGAGGGCGAGACTCTCGCCGCCAAGTCCGGCCAGACACTCGCCGGCGGCAAGGGTGCGAACCAGGCCACGTGTTCGGCGAGGCTTTCGTACCCGACGCACTTCGTTGGACAGGTTGGGGACGATGCTTATGGGAAGCTGGTCACGGAGGCTCTCCGTAACGGTGGGGTTTGCATTGATAACGTCACCGTGGTTGCATCAATGTCAACGGGTCACGCCGTAGTGATGCTCCAGTCTAACGGCCAGAACTCCATAATCTACATTGGGGGTGCCAACTTGAGTGGCTGGCCCACTACCCTGCCACGTCATCATTTGGACCTCGTGGCCCTCGCTGGCATCGTTTTGTTACAGAGAGAGATTCCCGACCCTGTTAACGTTCAAGTCGCAAAGGCTGCAAGAAGTGCTGGTGTGCCGGTAATATTGGATGCTGGGGGCATGGATGCACCTATTCCGCCGGAATTATTGAATTTTGTTGATATTCTGAGTCCTAATGAAACTGAACTTGGTCGCCTTACGGGAATGCCGACTGAAAGTTTTGAAGAGATTACACAGGCTGTTGTGAAATGCCATAAGTTTGGAGTTAAGCAAGTTCTTGTGAAACTAGGGGACAAAGGGTCTGCTCTTTTTGTAGAAGGAGAAAAACCAATTCAGCAACCTGCCATACTAGCTAAAACAGTCATTGATACAACTGGAGCTGGGGATACTTTTACCGCTGCTTTTGCTGTGGCCTTAGTTGAGGGCAAGTCCAGAAAGGAATGCCTCAGATTTGCGGCTGCTGCAGCTTGTCTTTGCGTTCAAGTGAAGGGAGCCAGTCCCAGCATGCCCGATAGGAAATCTGTTCTTGATCTTCTTAATTGTCAATGA 1095 0.5142 MSGTTLSPQIPNQCFKPSNRTRFPTLSQIEFISFRHQHHNHNLPLLCSASNPSSSSPPLVVIGSANADIYVEIDRLPREGETLAAKSGQTLAGGKGANQATCSARLSYPTHFVGQVGDDAYGKLVTEALRNGGVCIDNVTVVASMSTGHAVVMLQSNGQNSIIYIGGANLSGWPTTLPRHHLDLVALAGIVLLQREIPDPVNVQVAKAARSAGVPVILDAGGMDAPIPPELLNFVDILSPNETELGRLTGMPTESFEEITQAVVKCHKFGVKQVLVKLGDKGSALFVEGEKPIQQPAILAKTVIDTTGAGDTFTAAFAVALVEGKSRKECLRFAAAAACLCVQVKGASPSMPDRKSVLDLLNCQ* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0514 364 Gene3D - 56 363 IPR029056 -
Apr2g0514 364 Hamap Ribokinase [rbsK]. 57 359 IPR011877 GO:0004747|GO:0006014
Apr2g0514 364 CDD ribokinase 60 353 IPR011877 GO:0004747|GO:0006014
Apr2g0514 364 PRINTS Ribokinase signature 61 82 IPR002139 GO:0016301
Apr2g0514 364 PRINTS Ribokinase signature 88 107 IPR002139 GO:0016301
Apr2g0514 364 PRINTS Ribokinase signature 160 173 IPR002139 GO:0016301
Apr2g0514 364 PRINTS Ribokinase signature 230 245 IPR002139 GO:0016301
Apr2g0514 364 PRINTS Ribokinase signature 274 285 IPR002139 GO:0016301
Apr2g0514 364 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 305 318 IPR002173 GO:0016773
Apr2g0514 364 Pfam pfkB family carbohydrate kinase 59 353 IPR011611 -
Apr2g0514 364 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 93 117 IPR002173 GO:0016773
Apr2g0514 364 PANTHER SUGAR KINASE 56 362 - -
Apr2g0514 364 SUPERFAMILY Ribokinase-like 58 361 IPR029056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0514 Apr-Chr2 5942446 5945620 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0514 K00852 - gmx:102666284 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0514 2 5942446 5945620 Apr2g0514 2 5942446 5945620 ECH