Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0501 ATGGCTTCGTATACGCCAAAAAATATCCTCATTACTGGAGCTGCTGGATTCATTGCATCTCATGTTGCCAACAGGCTTATCCATAATTATCCCCACTACAAAATTGTTGTTCTTGACAAGCTTGATTATTGTTCAAATCTGAAGAACCTCACTCCTTCAAAATCATCTCCCAACTTAAAGTTTGTGAAGGGAGATATTGGAAGTGCTGACCTTGTCAACTACCTTCTCATCACCGAGTCTATTGACACAATAATGCACTTTGCTGCTCAAACCCATGTTGACAACTCGTTTGGTAACAGCTTTGAGTTCACCAAGAACAACATATACGGTACTCATGTCCTGTTAGAAGCCTGCAAGGTAACTGGCTTAGTCAGAAGGTTCATCCATGTGAGCACTGATGAGGTCTACGGAGAATCAGATGAGGATGCTGTTGACGGAAACCATGAGGCTTCTCAGTTACTTCCCACAAATCCATACTCTGCAACAAAGGCTGGGGCAGAAATGCTTGTCATGGCATATGGTAGGTCATATGGGTTACCTGTGATCACGACACGCGGAAATAATGTTTATGGGCCCAATCAATTTCCTGAGAAATTAATTCCAAAGTTCATTCTCCTGGCTATGCAAGGCAAGCCTCTTCCAATTCACGGGGATGGTTCTAATGTGAGGAGTTATTTATATTGTGAAGATGTTGCAGAGGCTTTTGAAGTTATCCTTCACAAGGGAGAGGTTGGGCATGTTTACAATATTGGAACTAAGAAGGAAAGAAGAGTTATTGATGTAGCCAAAGATATATGCAAGCTTTTTTCCATGGACCCACAGACTAGTATAAAATTTGTAGAGAACAGGCCATTTAATGACCAGAGATACTTTCTTGATGACCAAAAGCTGAAAATCTTGGGTTGGGCTGAGAAGACCACTTGGGAAGAGGGCTTGAAGAAAACCATGGAGTGGTATATCAGCAATCCTGATTGGTGGGGTGATGTCAGTGGTGCTTTGCTTCCTCATCCAAGGATGTTGATGAGGCCTGGTGGGATGGAGAAACATTTTGATGGGTCTGAAGAAGAAAAACCTTCATCATTTGTCTCCACTAATACTCGAATGGTGGTTCCAACATCCAAGAATGTTGGCTCTTTGCAGAAGCATACTCTCAAGTTCTTGATCTATGGCAGAACAGGCTGGATTGGGGGTTTGCTGGGGAAATTATGTGAAAAGCAAGGAATCCCCTATGAATATGGTAAAGGACGCCTAGAGGATCGCTCATCACTTGTGGCTGATATTCAGAGTGTGAAACCAACACATATTTTCAATGCAGCAGGAGTGACTGGCCGACCCAATGTTGATTGGTGTGAATCTCATAAAACAGAAACCATCCGCACCAATGTTGCTGGGACTTTAACATTGGCCGATGTCAGTAGGGAGCATGGGCTCTTGATGATAAATTATGCAACTGGATGCATATTTGAGTATGATAAAGCTCATCCAGAGGGTTCTGGCATTGGTTTTAAGGAGGAAGACAAACCCAATTTCACTGGTTCTTTCTATTCCAAAACTAAGGCTATGGTTGAAGAGCTCTTGAAAGAATATGACAACGTATGCACCCTCAGGGTTCGCATGCCAATTTCATCTGACCTGAGTAATCCACGCAATTTCATTACCAAGATTGCTCGTTATAACAAAGTCGTTAACATTCCAAACAGCATGACTATTTTGGATGAACTTCTGCCTATTTCAATTGAGATGGCAAAGCGAAACTTGAGGGGTATCTGGAACTTCACAAATCCTGGAGTTGTGAGTCATAATGAGATTCTTGAGATGTACAGGGATTACATTGATCCTAAGTTCAAGTGGGTTAACTTCACACTTGAAGAGCAAGCCACGGTGATAGTGGCTCCACGAAGCAACAATGAGTTGGATGCATCCAAATTGAAGAAAGAGTTCCCAGAGCTCCTTCCCATCAAGGAATCACTGATTAAGTATGTGTTTGAGCCAAACAAGAAAAGTGCTTAA 2010 0.4229 MASYTPKNILITGAAGFIASHVANRLIHNYPHYKIVVLDKLDYCSNLKNLTPSKSSPNLKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGLVRRFIHVSTDEVYGESDEDAVDGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTKKERRVIDVAKDICKLFSMDPQTSIKFVENRPFNDQRYFLDDQKLKILGWAEKTTWEEGLKKTMEWYISNPDWWGDVSGALLPHPRMLMRPGGMEKHFDGSEEEKPSSFVSTNTRMVVPTSKNVGSLQKHTLKFLIYGRTGWIGGLLGKLCEKQGIPYEYGKGRLEDRSSLVADIQSVKPTHIFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVSREHGLLMINYATGCIFEYDKAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLSNPRNFITKIARYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYRDYIDPKFKWVNFTLEEQATVIVAPRSNNELDASKLKKEFPELLPIKESLIKYVFEPNKKSA* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0501 669 Gene3D - 200 322 - -
Apr2g0501 669 CDD dTDP_GD_SDR_e 7 324 IPR005888 GO:0008460|GO:0009225
Apr2g0501 669 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
Apr2g0501 669 PANTHER TRIFUNCTIONAL UDP-GLUCOSE 4,6-DEHYDRATASE/UDP-4-KETO-6-DEOXY-D-GLUCOSE 3,5-EPIMERASE/UDP-4-KETO-L-RHAMNOSE-REDUCTASE RHM1-LIKE 1 666 - -
Apr2g0501 669 Pfam RmlD substrate binding domain 385 557 IPR029903 -
Apr2g0501 669 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 666 - -
Apr2g0501 669 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 382 660 IPR036291 -
Apr2g0501 669 CDD dTDP_HR_like_SDR_e 385 657 - -
Apr2g0501 669 Gene3D - 9 313 - -
Apr2g0501 669 Gene3D - 374 669 - -
Apr2g0501 669 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 331 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0501 Apr-Chr2 5813115 5816732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0501 8 320 Miscellaneous Gene Families AT4G00110 26.269 1.99e-19 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0501 K12450 - gmx:100775641 1290.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0501 2 5813115 5816732 Apr2g0501 2 5813115 5816732 ECH