Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0460 ATGGCTAGTACTTCCATTAACAGTGGTCTGGGGTGGAAATCTTCCTGCTTGTTCGTACAATCCAATCGGTTCAACGTTGTTTTGCCTCCTTTCAAACCAAAACCCCCCCTTACCAAGTTTTCTCTCACTTGCTCTGCCACCTCCTCTTCTTCTGATCCACTCTTGGTTAAGGCTGCTAGGGGAGATCCTGTGAGTCGCCCTCCGGCGTGGATGATGCGCCAAGCAGGAAGGTACATGGCTGTTTACAGAAAGCTTGCTGAGAAATATCCATCCTTCCGAGAGAGGTCAGAGACAACTGATCTCATTGTGGAAATTTCTTTGCAGCCTTGGAAAGCTTTCAGGCCTGATGGAGTAATTATTTTCTCTGATATCCTTACACCTCTACCTGCATTTGGAGTTGATTTTGACATAGAAGAAGCACGTGGACCTGTTATACATTCACCCATTCGTACTGAGGAGGGATTAAAGACTTTGCATCCAATTGATCTTGACAGGCTTAGATTTGTCGGAGAATCACTTAAGATGCTGCGCCAGGAGGTTGGTGGTCATGCTGCAGTTTTGGGTTTTGTGGGAGCTCCTTGGACAATAGCAACATATATTGTTGAAGGGGGTACAACACGTACATATACAATCATTAAGAGCATGTGCCACACAGCACCACACTTATTGAGGACTTTGCTTTCTCATTTGACACAAGCCATAGCTGATTACGTTATTTTCCAAGTTGAGTCTGGGGCTCACTGCATACAAATATTTGATTCATGGGGTGGACAACTACCACCTGAAATGTGGGAACGCTGGTCAAAGCCTTATATCAAAGAGATTGTAAATTTGGTCAAGAAAAAATGCCCTGGAATACCAATTGTTCTTTATATAAATGGAAATGGTGGCCTTCTCGAGCGTATGAAAGACACAGGAGTTGATGTTATAGGTCTAGACTGGACGGTGGATATGGCAGATGGAAGAAGAAGATTGGGCAGTGGGATAGGTGTGCAAGGAAATGTGGACCCTGCCTACTTATTCTCCCCTCTTCCTGCCCTTGCTGAAGAAATTCAGAGGGTTGTGAGGTGTGCGGGACCTAGACGGCATATCCTTAATCTTGGTCATGGTGTTCTTGTTGGCACACCTGAAGAAGCTGTTGCACATTTCTTTGAAGTGACTAGGAGCTTGCAGTTTGATACACTTTTTCAAAATAATACTGCAAAAGATCCTAATCTCGTAATTTAA 1227 0.4425 MASTSINSGLGWKSSCLFVQSNRFNVVLPPFKPKPPLTKFSLTCSATSSSSDPLLVKAARGDPVSRPPAWMMRQAGRYMAVYRKLAEKYPSFRERSETTDLIVEISLQPWKAFRPDGVIIFSDILTPLPAFGVDFDIEEARGPVIHSPIRTEEGLKTLHPIDLDRLRFVGESLKMLRQEVGGHAAVLGFVGAPWTIATYIVEGGTTRTYTIIKSMCHTAPHLLRTLLSHLTQAIADYVIFQVESGAHCIQIFDSWGGQLPPEMWERWSKPYIKEIVNLVKKKCPGIPIVLYINGNGGLLERMKDTGVDVIGLDWTVDMADGRRRLGSGIGVQGNVDPAYLFSPLPALAEEIQRVVRCAGPRRHILNLGHGVLVGTPEEAVAHFFEVTRSLQFDTLFQNNTAKDPNLVI* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0460 408 Hamap Uroporphyrinogen decarboxylase [hemE]. 51 391 IPR006361 GO:0004853|GO:0006779
Apr2g0460 408 Gene3D - 44 392 IPR038071 -
Apr2g0460 408 TIGRFAM hemE: uroporphyrinogen decarboxylase 55 388 IPR006361 GO:0004853|GO:0006779
Apr2g0460 408 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 68 77 IPR000257 GO:0004853|GO:0006779
Apr2g0460 408 Pfam Uroporphyrinogen decarboxylase (URO-D) 54 389 IPR000257 GO:0004853|GO:0006779
Apr2g0460 408 SUPERFAMILY UROD/MetE-like 54 390 IPR038071 -
Apr2g0460 408 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 40 402 - -
Apr2g0460 408 CDD URO-D 57 389 IPR006361 GO:0004853|GO:0006779
Apr2g0460 408 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 1, CHLOROPLASTIC 40 402 - -
Apr2g0460 408 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 187 203 IPR000257 GO:0004853|GO:0006779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0460 Apr-Chr2 5316193 5319824 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0460 K01599 - gmx:100807032 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0460 2 5316193 5319824 Apr2g0460 2 5316193 5319824 ECH