Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0437 ATGTTTCCCTCTCTCACTTCTCACCGTATCCTCTGCCTCTTCATTGGGATCGTGATCCTCTGCGGTCACGCCCACGCTCGCACCATCACGCGCGATCTCGTTTCTGATGGTGGCGAGGGGAACAAATGGGAGAACCTGTTTCTGCGGCTTCCAACGGAGTCATCTTGCGAGCAGACCTACGGGTTCTTACCGTGCACCACCACTGTGATCGGAAACTTGTTCCTCATCGTCGTCTATGGCTTCCTCATGTACAAGGCCGCTACATTCTTGTCCAATGGCAGTGAACTTTTGCTCGAGATCTTGGGTCCTGGCATCGTTGGTGGCTTGTTCCTTCCCATCCTCGGTGCACTGCCCGACGCTATGCTCATTCTCGTATCTGGACTTTCAGGTAGTAAAGAAACTGCTCAAAGTCAAGTATCTGTTGGAATGGGACTGCTAGCTGGTTCAACAGTGCTGCTTCTGACTATAATATGGGGGACCTGTGTAATAGTTGGCAAGTGTGACATTGAGGATTCAATTGCAATAGATTCACGAGACACTAGAGGATTTAGTTTAACTGGTTCTGGTGTTAGTACTGATATTTGGACAAGTTATGCTGCAAGGATTATGGCTATATCTGTCCTTCCATTTGTGATTGTTCAATTTCCACAAATTCTCAATTCAAATTCGGGAAGGCATTTGGCTGTTTTGATTGCTCTCATTGTCTCTCTCTGTTTATTGGTTGCTTATTGCCTTTACCAGATTTTCCAGCCGTGGATACAAAGGAGAAAACTTGAATATATTAAACACAAACATGTTATTTTAGGACTTTTGAGACATTTGAAGAAGCGTGCGTTGGGAAGGTTGCTGAGAGAAGATGGTGAACCTGATGAAGACGTCATTAGAAAGTTGTTTTCAACAATTGATGAAAATAATGATGGCAATCTTACTCGTAATGAATTGAGAGCACTGGTTATTGGAATTCAATTTGAGGAGATTGACCTGGATCATGATGATGCTGTAAAAAGAATCATGGAGGATTTTGATACTTCTCGTAACCAACTTGTTGATCAAAGAGAATTTGTTAATGGTGTCTGTAGATGGCTTCACAAGGCCAGAAGTTCTCGAGTTGCATCGGGTGATGCTGGTCCACACACAATGAAGTTTTTAAGCGATTTTCACACAGAAACTAAGAGGGAACATGATCTGCTGGATGTGGGGGATCAGAGTAATGAAGATGCCGAGGGAATTGAGAATGCTAAGTGGACTTCCATCAAAGCAGTGCTGCTGCTGCTGTTGGGTACTATTATTGCTGCTGCATTTGCTGATCCTCTGGTTGATGCAGTTGATAACTTTTCTGATGCTACAAGTATTCCTGCTTTCTTCATTTCCTTCATTGCTCTGCCTTTAGCAACCAATTCAAGTGAAGCAGTGTCAGCAATAATCTTTGCTAGTCGTGATAAGAGGCAAACTGCCTCGTTAACTTTTTCTGAGATATATGGTGCAGTGACAATGAATAATGTGCTTTGCCTATCAGTCTTTTTGGCCCTCGTTTATGTGAGGGGATTGACATGGAACTTCTCTTCAGAAGTGTTAGTTATTCTTGTGGTTTGCATTGTCGTTGGTGTCTTTGCCAGTTTCCGCACTGTCTTCCCTCTATGGACATCTATACTGGCTATACTACTCTATCCCTTCTCCCTGGTATTGGTGTATGTTCTTGATTTTGTATTTGGTTGGTCGTAG 1722 0.4338 MFPSLTSHRILCLFIGIVILCGHAHARTITRDLVSDGGEGNKWENLFLRLPTESSCEQTYGFLPCTTTVIGNLFLIVVYGFLMYKAATFLSNGSELLLEILGPGIVGGLFLPILGALPDAMLILVSGLSGSKETAQSQVSVGMGLLAGSTVLLLTIIWGTCVIVGKCDIEDSIAIDSRDTRGFSLTGSGVSTDIWTSYAARIMAISVLPFVIVQFPQILNSNSGRHLAVLIALIVSLCLLVAYCLYQIFQPWIQRRKLEYIKHKHVILGLLRHLKKRALGRLLREDGEPDEDVIRKLFSTIDENNDGNLTRNELRALVIGIQFEEIDLDHDDAVKRIMEDFDTSRNQLVDQREFVNGVCRWLHKARSSRVASGDAGPHTMKFLSDFHTETKREHDLLDVGDQSNEDAEGIENAKWTSIKAVLLLLLGTIIAAAFADPLVDAVDNFSDATSIPAFFISFIALPLATNSSEAVSAIIFASRDKRQTASLTFSEIYGAVTMNNVLCLSVFLALVYVRGLTWNFSSEVLVILVVCIVVGVFASFRTVFPLWTSILAILLYPFSLVLVYVLDFVFGWS* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0437 573 Pfam EF-hand domain pair 292 356 IPR002048 GO:0005509
Apr2g0437 573 ProSitePatterns EF-hand calcium-binding domain. 342 354 IPR018247 -
Apr2g0437 573 ProSitePatterns EF-hand calcium-binding domain. 302 314 IPR018247 -
Apr2g0437 573 ProSiteProfiles EF-hand calcium-binding domain profile. 289 324 IPR002048 GO:0005509
Apr2g0437 573 CDD EFh 294 358 IPR002048 GO:0005509
Apr2g0437 573 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 15 570 IPR004713 GO:0006812|GO:0008324|GO:0016021
Apr2g0437 573 PANTHER SODIUM/CALCIUM EXCHANGER NCL 15 570 - -
Apr2g0437 573 SMART efh_1 333 361 IPR002048 GO:0005509
Apr2g0437 573 SMART efh_1 293 321 IPR002048 GO:0005509
Apr2g0437 573 SUPERFAMILY EF-hand 288 361 IPR011992 -
Apr2g0437 573 Gene3D - 246 373 - -
Apr2g0437 573 Pfam Sodium/calcium exchanger protein 420 564 IPR004837 GO:0016021|GO:0055085
Apr2g0437 573 Pfam Sodium/calcium exchanger protein 74 250 IPR004837 GO:0016021|GO:0055085
Apr2g0437 573 Gene3D - 409 566 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0437 Apr-Chr2 5080213 5085504 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0437 53 573 EF-hand Containing Proteins AT1G53210 70.937 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0437 - - gmx:100809896 958.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0437 2 5080213 5085504 Apr2g0437 2 5080213 5085504 ECH