Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0434 ATGAGAAGAAACATGTCAAAAGTAGCATGCTTCACTCTCTTTCTTTTTGTAGTAGCACTTCATGTTGAATGCCGTTCTCTTCGCACAAGTGTTTCTAATGAGTTGGTTTCTGATGGGGTTGATGATGTTCAACCTCGAGACTCTTATCTACGACTCAAAGACCAAAAGGTTGAATCTTCTGGTGGGACATACTGTAAGCAAATGTATGGTTTCTTGCCATGTTCCAACAACATTGTTGGTCATCTCTTCCTCATTTTGGTTTATGAGTACTTGTTGTTCCATGGAGAATCATATTTGGCTGCTGGGGGTGAACAAATCTTCAAGATTCTTGGTCCAGGTGTTTTTGGTGCTAGTGCCTTTGATATTCTTGGTGCTCTTCCAGAGTCCTTAATTCTTGTTGTTACTGGACTTTCCAGTGACAAGGAGCGTGCACAAGAGTATGCTTCCACTGGAGTTGGATTGTTGGCTGGATCTTCTATTTTGCTTCTGACAGTAGTGTGGGGAACGTGTGTTATCGTTGGCAAGCAAAAGTTGAAAAATGAGTCTCACTCTGATGGCTCAAATTCATCAAGTGGACCAATAAGAGAATCATTGACTGGTTATGGTATTACAATGGATGTAGAAACTAGAAAGATGGCAAGAATCATGGTTTTCTCAGTTATACCACTCATCATAATGCAGATTCCCAATTTATTCCGTCTCTCCACTACGCCAAGTGATGTGACCTTGATGATTGCTCTAACTGTTGCTGTTGCCTTTCTCATCTCATACTTCATTTACCAGATCTTCAAACCTCAGATAGAGAAAACAAGACTAGAATACATAAAACATCATGATTTAATATTAAGAATTTTTCAACGTGTTGAGAAGCAAACTCTACAAAAGATCCTGACCGAGGATGGGACTCCCGATGTAAATGCCATAAGTGTGCTATATCACGAAATTAGTCAACGTGGGGGACAGGATTTATTAGTTACTGAAGTAAAAGAGTTGCTGCTTGGGAACAAATTAACTGATGCAAATATCAAAGAGGAACAAATAGCAGACTTGTTAAAAGTTTTTGACCGAAATGGTGACCAAATTATAACCAAGGAAGAGTTTGTAACTGGCTTAACAGAATACATTAACCAAACAAAGCATGCTGTAGATAGACAGTACCTCCCTAAAGAATCTCTTAACAAAATGTATCAGACTTTTATCAAGCCATGGATTGAACATGTGAGAAAAGAACGTGAATTGAAGGGGCATCTTATATCTGAAGTCTTAAGGCATGCTCAGAATGATATGGTTGGCAGGCTGCGCAAAGATGATGGCGCACCTGATATAGCTGCTATCAAAAGGTTGTTTGAGGAATTTGATATCAATCAGGACCACCACATTTCAAGATCTGAACTAGGAAAAATAGTCAAGGGCATCCAGTTTGGTAAGGTTGTAGATGCAGAAGAGGCAGTTTCAAAACTAATTCAAGATCTTGATCACAACAGAGACAATGAAATTAGTGAGAATGAGTTTGTTGAAGGTCTTACAAAATGGATAAACTCAAATCCCAATCAAGCTTCCAACTCAAAATCTTCATCTCATCAAATTCATCGAACCTGGGAAGATGTTGAAAAGGTAATGGAAGAGAATCATACCAAAGGAGCATGTGCATGGTTGACGGCTATAGCATATGTGGTGTTGGGAGTTACTATACTGTCTCTTCTTGCAGAGCCACTAATAGCGAGTGTCCAAAAATTCTCAGAAGATGCAGGAATGTCACCATTTTTCATCTCATTCATTTTAGTCCCCTTGGCTACAAATTTTAGAGAAGCAACCTCAGCAATCAAAGAAGCTAGCCATAAGAAAAGCAGTAATACTTCTCAGACTATGTATGAGATTTATGGAGCAGTGTTCATGAACAACATTCTTGGCTTTGTGGTGATTTCCATTCTTATATACATGCGAGATATCACTTGGGAATTCTCAGCTGATGTACTAGTTGTGGCAATTGTTTGTGCTGTTATGGGCCTCACAGCTACTTTTTGGCACACTTTTCCTCTTTGGACATCCTTCCCTGCATATCTCATGTACCTATTATCATTGCTTTTGCTTTTTGTTCTTAAAGAAGTTTTATTTTATGTTTAG 2124 0.3879 MRRNMSKVACFTLFLFVVALHVECRSLRTSVSNELVSDGVDDVQPRDSYLRLKDQKVESSGGTYCKQMYGFLPCSNNIVGHLFLILVYEYLLFHGESYLAAGGEQIFKILGPGVFGASAFDILGALPESLILVVTGLSSDKERAQEYASTGVGLLAGSSILLLTVVWGTCVIVGKQKLKNESHSDGSNSSSGPIRESLTGYGITMDVETRKMARIMVFSVIPLIIMQIPNLFRLSTTPSDVTLMIALTVAVAFLISYFIYQIFKPQIEKTRLEYIKHHDLILRIFQRVEKQTLQKILTEDGTPDVNAISVLYHEISQRGGQDLLVTEVKELLLGNKLTDANIKEEQIADLLKVFDRNGDQIITKEEFVTGLTEYINQTKHAVDRQYLPKESLNKMYQTFIKPWIEHVRKERELKGHLISEVLRHAQNDMVGRLRKDDGAPDIAAIKRLFEEFDINQDHHISRSELGKIVKGIQFGKVVDAEEAVSKLIQDLDHNRDNEISENEFVEGLTKWINSNPNQASNSKSSSHQIHRTWEDVEKVMEENHTKGACAWLTAIAYVVLGVTILSLLAEPLIASVQKFSEDAGMSPFFISFILVPLATNFREATSAIKEASHKKSSNTSQTMYEIYGAVFMNNILGFVVISILIYMRDITWEFSADVLVVAIVCAVMGLTATFWHTFPLWTSFPAYLMYLLSLLLLFVLKEVLFYV* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0434 707 CDD EFh 445 509 IPR002048 GO:0005509
Apr2g0434 707 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 11 388 - -
Apr2g0434 707 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 395 530 - -
Apr2g0434 707 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 556 702 - -
Apr2g0434 707 Gene3D - 383 526 - -
Apr2g0434 707 SMART efh_1 346 374 IPR002048 GO:0005509
Apr2g0434 707 SMART efh_1 483 511 IPR002048 GO:0005509
Apr2g0434 707 SMART efh_1 444 472 IPR002048 GO:0005509
Apr2g0434 707 Pfam EF-hand domain pair 444 506 IPR002048 GO:0005509
Apr2g0434 707 Pfam Sodium/calcium exchanger protein 97 261 IPR004837 GO:0016021|GO:0055085
Apr2g0434 707 Pfam Sodium/calcium exchanger protein 555 698 IPR004837 GO:0016021|GO:0055085
Apr2g0434 707 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 556 702 - -
Apr2g0434 707 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 395 530 - -
Apr2g0434 707 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 11 388 - -
Apr2g0434 707 Gene3D - 303 382 - -
Apr2g0434 707 ProSiteProfiles EF-hand calcium-binding domain profile. 342 377 IPR002048 GO:0005509
Apr2g0434 707 ProSitePatterns EF-hand calcium-binding domain. 355 367 IPR018247 -
Apr2g0434 707 ProSiteProfiles EF-hand calcium-binding domain profile. 440 475 IPR002048 GO:0005509
Apr2g0434 707 ProSiteProfiles EF-hand calcium-binding domain profile. 479 514 IPR002048 GO:0005509
Apr2g0434 707 ProSitePatterns EF-hand calcium-binding domain. 453 465 IPR018247 -
Apr2g0434 707 ProSitePatterns EF-hand calcium-binding domain. 492 504 IPR018247 -
Apr2g0434 707 SUPERFAMILY EF-hand 330 515 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0434 Apr-Chr2 5041130 5045413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0434 395 700 EF-hand Containing Proteins AT1G53210 39.077 1.52e-59 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0434 - - gmx:100799062 1132.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0434 2 5041130 5045413 Apr2g0434 2 5041130 5045413 ECH