Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0409 ATGATGCAGAGAAAAGGAAGTTCTGATGGCACAATAACACAGGCCACACCCCTATTAGATGTTACCACTCATCATGAAGAGGAAGAAAACACAACTCCATGGTGGAGCAAAATCTTGGACTTGGAGGAAGCTAAGTGTCAACTACTTTTTTCACTGCCAATGTTTCTCACTAACTTGTCCTATTACTTGATCACTTTGGTCTCTGTCATGTTCGCTGGCCACCTTGGGGAGCTTCAGCTTGCAGGTGCTACTTTGGCAAATTCATGGTTTAGTGTCACTGGTTTGGCAGTTATGGTTGGCTTGAGTGGGGCACTAGAAACACTTTGTGGACAAGGATTTGGAGCAAAAGAATACAAAATGTTGGGAATATATCTGCAATCCTCTTGCATCATATCTTTTGTTTTCTGTATCATCATAGCCATTATTTGGTTCTATACAGAACCAATCCTTTTATTGCTTCACCAATCTCATGATATTGCAAAAGAAGCTGGACTCTATGTGAAGTATCTTATCCCTGGCATATTTGCATATGGCTTTTTGCAAAATATCTTGAGGTTTCTTCAAACACAATCTGTTGTAACACCATTGGTGATCTTCTCAGTTATTCCACTGTTGATTCATATTCTTATTGCATATGCCTTGATATACTGGACAGATTTGAGTTTTATAGGGGCTCCTATAGCAGCTTCTATCTCATTATGGATTTCCATACCATTGTTGGCCATGTATATCAACTATGCAGAAAAGTTCAAGCAAACTTGGACAGGATTTTCAGTTGAGTCATTCCATTACATATTTGTAGAGCTGAAACTGGCTTTGCTCTCTGCAGCAATGGTATGTTTGGAGTATTGGGCTTTTGAGATTATGGTTTTGTTAGCTGGACTAATGCCTGACCCAACAATAACTACTTCATTGATTGCAGTATGTGCAAACACAGAACTAATTGCCTACCTGATCACTTATGGTCTTAGCGCAGCTGCAAGCACAAGGGTCTCCAATGAATTGGGAGCAGGGCACCCTGATCGAGCTAAGAATGCAATGAGAGTCACCCTTTTGCTCTCTCTCTTCCTCGGTTTATGTTTTGGTTTGGCACTTACATTTGGTCATAATATTTGGATTCAATTGTTTAGTGATAGTGCTAAAATTAAAGAAGAGTTTGCTTCAGTGACACCCTTACTTGTCATTTCTATACTACTAGATGCTATCCAAGGTGTTTTGTCAGGTGTGATCAGAGGATGTGGTTGGCAACACTTGGCTGCATATGTCAACTTAGCAACATTTTATGTTGTTGGTTTGCCAATATCATGCCTTCTTGGATTTAATTTCAACATGCAGGCTAAGGGTTTATGGATTGGACTAATTTGTGGGCTGGTTTGTCAAACTGGGACTCTCTTGTTTTTGACCTCGCGTACTACCAAATGGACTAAACTGAATGTCTCTTTGGGCCAAGATTAA 1455 0.4 MMQRKGSSDGTITQATPLLDVTTHHEEEENTTPWWSKILDLEEAKCQLLFSLPMFLTNLSYYLITLVSVMFAGHLGELQLAGATLANSWFSVTGLAVMVGLSGALETLCGQGFGAKEYKMLGIYLQSSCIISFVFCIIIAIIWFYTEPILLLLHQSHDIAKEAGLYVKYLIPGIFAYGFLQNILRFLQTQSVVTPLVIFSVIPLLIHILIAYALIYWTDLSFIGAPIAASISLWISIPLLAMYINYAEKFKQTWTGFSVESFHYIFVELKLALLSAAMVCLEYWAFEIMVLLAGLMPDPTITTSLIAVCANTELIAYLITYGLSAAASTRVSNELGAGHPDRAKNAMRVTLLLSLFLGLCFGLALTFGHNIWIQLFSDSAKIKEEFASVTPLLVISILLDAIQGVLSGVIRGCGWQHLAAYVNLATFYVVGLPISCLLGFNFNMQAKGLWIGLICGLVCQTGTLLFLTSRTTKWTKLNVSLGQD* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0409 484 Pfam MatE 276 435 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Apr2g0409 484 Pfam MatE 53 212 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Apr2g0409 484 PANTHER MULTIDRUG RESISTANCE PROTEIN 23 480 - -
Apr2g0409 484 MobiDBLite consensus disorder prediction 1 25 - -
Apr2g0409 484 CDD MATE_eukaryotic 43 476 IPR045069 GO:0042910|GO:1990961
Apr2g0409 484 MobiDBLite consensus disorder prediction 1 20 - -
Apr2g0409 484 PANTHER PROTEIN DETOXIFICATION 23 480 - -
Apr2g0409 484 TIGRFAM matE: MATE efflux family protein 53 450 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0409 Apr-Chr2 4788159 4791549 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0409 K03327 - gmx:100816310 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0409 2 4788159 4791549 Apr2g0409 2 4788159 4791549 ECH