Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0406 ATGGCTGCGATTGGTCTGAACGGCGTGAAGGTGGGAACGACGTCCTCTCAGGCGTACCTTGAAAGCAAGGCAGTGAAAGAAACAAGGGCTCTAATGGCTGAACTGTGTAGGCACTTCTACAACCTTGGATGGGTCACAGGCACTGGTGGTAGCATCACCATGAAGGTTCATGATGATTCTATTCCCAAGCCTCAACAACTCATTCTCATGTCCCCTTCTGGTGTTCAGAAAGAAAGAATGGAGCCAGAGGACATGTATGTGTTATCAAACAGTGGGCTTGTCTTGTCTGCTCCATCTCCTAAACCATACCCGCACAAGCCTCCCAAGTGTACTGATTGTGATCCACTTTTCAGGAAGGCATATGAAATGCGTGATGCTGTGGCTGTTTTCCACAGTCACGGAATAGAATCTTGTCTTGTAACAATGATCAATCCTTTATCAAAGGAATTTCGGATCACTCACATGGAAATGATAAAAGGAATCAAGGGGCATGGTTATTATGATGAACTTGTAGTTCCCATAATTGAGAACACGGCCTATGAGTATCAGCTCACAGAATCTTTTGCTAAAGCTATTGAAGATTACCCAAAAGCAACAGCAGTACTTGTTCGCAACCATGGAGTATTTGTTTGGGGAGACTCGTGGATTAGTGCTAAAACTCAGTCTGAGTGTTACCATTACCTCTTTGATGCTGCTATCAAACTTCACCAAATGGGATTGGACTGGTCAACTCCAAATCATGGTCCAATACAAAGTGCAAGAAGGGGTCTACTAAGTATTGTCGGACAGTCAAATGTATCAGTTAAAGCAAGGAAACATTGCATTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTTTCAGAGGTTCTCTTCCCATATGCCCGTGATAATGTTGGGAGGCATCTATCTGCAACATATGATACCCCTGAGACTAAAGCTGATATCAAGTTGCTTCGTTCCCAAGTTGAAAGTGACCTTGCACAAGGGATTGCAGGTGCTGTGCCTATCCCTCCAGATGATGCTGGGAAAGAGGAAGTCATTGCTGCACTTGTTGTTAATGTGAATGCTATGATTAAAGCAGATAGAAAGATCACTGCCTTAAAAGAGTTGCAGGGTCATATATGGAGAACTGGTTATGAGAATAATGAATTGGAGGGAATAGTTTTTGATGATGTACCAGAAGCTCTAGAAAAATGGCACGCCTTGGGTTTAAAGGTATACATATATTCTAGTGGTAGCAGGTTGGCACAAAGGCTAATATTTGGAAAAACGAACTATGGGGACCTAAGGAAATATTTATCTGGGTTTTTTGACACCACAGTGGGGAACAAAAGAGAGACACGCAGTTACGTTGAAATTTCTGAGTCACTTGGTGTTGATAAACCCTCAGATATTCTATTCGTCACTGATGTATATCAAGAAGCTACAGCTGCAAAGGCAGCAGGTTTGGAGGCGATCATTTCTATTCGACCTGGAAATGGACCCCTCCCTGAAAATCATGGCTTCAAGACAATCAAATCCTTCTTGGAGATCTAA 1545 0.4272 MAAIGLNGVKVGTTSSQAYLESKAVKETRALMAELCRHFYNLGWVTGTGGSITMKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSNSGLVLSAPSPKPYPHKPPKCTDCDPLFRKAYEMRDAVAVFHSHGIESCLVTMINPLSKEFRITHMEMIKGIKGHGYYDELVVPIIENTAYEYQLTESFAKAIEDYPKATAVLVRNHGVFVWGDSWISAKTQSECYHYLFDAAIKLHQMGLDWSTPNHGPIQSARRGLLSIVGQSNVSVKARKHCIVLDIEGTTTPISFVSEVLFPYARDNVGRHLSATYDTPETKADIKLLRSQVESDLAQGIAGAVPIPPDDAGKEEVIAALVVNVNAMIKADRKITALKELQGHIWRTGYENNELEGIVFDDVPEALEKWHALGLKVYIYSSGSRLAQRLIFGKTNYGDLRKYLSGFFDTTVGNKRETRSYVEISESLGVDKPSDILFVTDVYQEATAAKAAGLEAIISIRPGNGPLPENHGFKTIKSFLEI* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0406 514 Hamap Methylthioribulose-1-phosphate dehydratase [APIP]. 17 241 IPR027514 GO:0005737|GO:0019509|GO:0046872
Apr2g0406 514 CDD HAD_EP 274 495 IPR023943 GO:0000287|GO:0019509|GO:0043874
Apr2g0406 514 SUPERFAMILY HAD-like 273 514 IPR036412 -
Apr2g0406 514 Gene3D - 25 249 IPR036409 -
Apr2g0406 514 SFLD enolase-phosphatase 274 512 IPR023943 GO:0000287|GO:0019509|GO:0043874
Apr2g0406 514 SFLD C1.5.4: Enolase-phosphatase Like 274 512 - -
Apr2g0406 514 TIGRFAM enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 274 511 IPR023943 GO:0000287|GO:0019509|GO:0043874
Apr2g0406 514 SMART Aldolase_II_2 30 233 IPR001303 -
Apr2g0406 514 Pfam Class II Aldolase and Adducin N-terminal domain 31 232 IPR001303 -
Apr2g0406 514 SUPERFAMILY AraD/HMP-PK domain-like 26 246 IPR036409 -
Apr2g0406 514 Pfam haloacid dehalogenase-like hydrolase 274 485 - -
Apr2g0406 514 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1. 17 514 IPR027505 -
Apr2g0406 514 Hamap Enolase-phosphatase E1 [mtnC]. 271 508 IPR023943 GO:0000287|GO:0019509|GO:0043874
Apr2g0406 514 TIGRFAM salvage_mtnB: methylthioribulose-1-phosphate dehydratase 32 237 IPR017714 GO:0005737|GO:0019509|GO:0046872
Apr2g0406 514 Gene3D - 286 381 - -
Apr2g0406 514 Gene3D - 382 514 IPR023214 -
Apr2g0406 514 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 1 514 IPR017714 GO:0005737|GO:0019509|GO:0046872
Apr2g0406 514 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 1 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0406 Apr-Chr2 4754910 4761709 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0406 K16054 - gmx:100796209 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0406 2 4754910 4761709 Apr2g0406 2 4754910 4761709 ECH