Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0403 ATGGCTGCTGCCACTAGCTTTGGAACTGTGTGGTGTCTGAGAAAAGCTGCTCAGGCTTTTACGGTCTCTCATTCTCATATTCTCCGCCGCAATGCCATTGCCAACCTCTCTTTCCAAAGAAACCTTTGCTCTCATCTTCTCTGCGTTCCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCTTCATGTGTAAGCCAGACAGTACAAGCTTTAAAGGGTGACTTTGATGTGTTACTCAAGGGAGTAGGAGAAAGAAGTGTAACAAAAGAAGTGAAACATATTCTTGAGATGGCTAGACGAGCATCATTAAAACGAGATGTTCTCCACACAGATTTTTTAACACCTCCAGTGCTAAAGGAATCTATGCAAGTTTTGGAAAAATTAGCAGATGTGAAAGCAATTGCTCAAGGAGGTTATCCACAGGCTGAACGTTGTCGGGTTTCTGTTGGACATCCAGAAGAACTGACAAGTGATCCTGATATTATTTCAGCATTGAGCATTACAGGGAACTTTCAGTTTGAACCTTGTTCGCATGGTGACTTCCTTGGCTCAATTCTTGGTACAGGAATTGCCAGGGAGAAACTTGGAGATATTATATTGCAGGGAGAACAGGGTGCTCAGATACTTGTTGTACCAGAACTTGATGAATTTCTCATGTCAACGCTAGTTAAGGTTGGTAAGGTTCCTGTAACTTGCAGCAAGATACCCTTAATTTCTCTTGATTATGAACCGCCGAGAACTAAATCATTCAAAACTATTGAAGCATCACTAAGAGTTGATGCACTAGCTAGTGCCGGATTTAAGATTTCACGTTCAAAGCTAGTTGACATGATCAGCAATGGTGATGTGCGTATCAACTGGATTCCTGTTACTACCAAAGGAACCACACTAAAGAGTGGAGATATTGTATCAGTTAGTGGAAAGGGAAGATTAAAGATAGGAGAAATAAACTCCACAAAGAAAGGAAAGTTTGCAGTGGAGCTCATTCGGTATTTGTAG 1002 0.4132 MAAATSFGTVWCLRKAAQAFTVSHSHILRRNAIANLSFQRNLCSHLLCVPSSSSSSSSSSSASCVSQTVQALKGDFDVLLKGVGERSVTKEVKHILEMARRASLKRDVLHTDFLTPPVLKESMQVLEKLADVKAIAQGGYPQAERCRVSVGHPEELTSDPDIISALSITGNFQFEPCSHGDFLGSILGTGIAREKLGDIILQGEQGAQILVVPELDEFLMSTLVKVGKVPVTCSKIPLISLDYEPPRTKSFKTIEASLRVDALASAGFKISRSKLVDMISNGDVRINWIPVTTKGTTLKSGDIVSVSGKGRLKIGEINSTKKGKFAVELIRYL* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0403 333 Pfam S4 domain 262 304 IPR002942 GO:0003723
Apr2g0403 333 Gene3D - 86 151 - -
Apr2g0403 333 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 66 333 - -
Apr2g0403 333 SMART s4_6 258 318 IPR002942 GO:0003723
Apr2g0403 333 Pfam Putative RNA-binding domain in YlmH 164 238 IPR040591 -
Apr2g0403 333 Gene3D - 252 309 IPR036986 GO:0003723
Apr2g0403 333 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 66 333 - -
Apr2g0403 333 Gene3D - 159 241 IPR012677 -
Apr2g0403 333 ProSiteProfiles S4 RNA-binding domain profile. 258 318 - -
Apr2g0403 333 SUPERFAMILY Alpha-L RNA-binding motif 117 321 - -
Apr2g0403 333 TIGRFAM PS_II_S4: photosystem II S4 domain protein 88 331 IPR017506 -
Apr2g0403 333 CDD S4 259 313 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0403 - - aprc:113855078 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0403 2 4713829 4719058 Apr2g0403 2 4713829 4719058 ECH