Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0392 ATGGACCCTAACGTCGTCGAGATTCCTCCGCCACTTCACCACCCTTCACAATTTTATGATCAGAAAAAGATCATTTTGCATGATGTGATTGACATTGACAACGATGACGATGACTCTGAAGATGTAGTGATAATTGGTGAAAAAGTTAATAATAGTAACAAAGGAAAGACAATTGATGCTGTTCATGGTTATGATAATCATCAAGTTGAGGAAATGTCCAATAATACCTTCTGTCTGCCTGGTGTGGAAAATTTTGGATCATTTAGTCCGATTGTGTCTTCTAATGAAGATTATATGGATGTAGATGAGTATGCTCTATTACAGAAACAATTTGATAATGTGGATATACCTCCTGGAATTGAGGCACCTTTTACTTGGTCGCCACCAGAATATGACGTAGGTATGGAGAAGACTGGAAACAGTTCATTGTATCCTTGGTGTCCTGTGCAGTCAAATGCTAAAATTAGTCACACGACACACTCGTTTCAGCCTTCTTTGTCATTAGAGCCTAATAACTCTAAAATCCAAGGATCTTCTGTGGGTAGTTCTAAGGTTCAAATCAAAATGGATAATGTTGATCACTCTTCTGGAATGGAGTCGTCTTCCCAATTATTTTCTCAAGTTGCCTCTAGTAAGAAGAAATTTTCTACTTCAAAACACAGAGGGCATACTTCAAATGTTTCATTGGGAGTAGAGTCATCCAAGTCTCACTGGTTTCTGGGACCTTTCCACAATAAAAAGAAACCTGCTGTTGGTGCTTCAACAAACCATGGTTTTATTGACAAATCAGAGGCTGTGAACCTGTCACATGCAGTTGAGCCTTTGGGGCAAATTAGAAGTGCTAAGAAGGCAGGTGGGAGCAGTTCACATCATTCAAATTTCATCGGACATCATGGACTAGTTTATCCTCCGGTAATTGAATCAGGAAAACCTTGGTGGAAGAATTCTCATAAAGTTAAACCATTATTTCCCAATCATCACACTCACACTAATCCTATTTATTATCCATTTGATCCTCATCTTGACCATCCTGAGCATGTTCTTGACAACACTTGGGTTCACGATTCTGTGGAAGATGGAAATAATGGAACAGCTTTGGATGGCCCTCTTGTTACAATCTCTGATGAAGCTAGAGATGAAATTCTGAGGAAATTCCAAAGCTTTAAACAATTTGATACAGTTGAAGACACTTCAGACCATTATTATATTCGCAATAATTCTTCAATGGAACAGCGTCCAAAGAACTGGACTAAAAAAATCCAGGAAGAATGGAAGATTTTGGAGAAGGATTTGCCTGATTCAATATTTGTCAGAGTTTATGAATCAAGGATGGATCTCTTAAGGGCTGTGATTATTGGAGCAGAAGGGACTCCTTATCATGATGGCCTTTTCTTTTTTGATGTTTTCTTTCCCAGTGGCTATCCCAATGTACCTCCACAAGTCCACTACCACTCTGGAGGTCTTCGGCTAAACCCAAATTTGTATCATTGTGGCAAAGTATGCCTTAGTCTACTTAACACCTGGTCTGGCAACAAGAATGAGAGGTGGCTTCCAGGTGTTTCAACAATTCTACAGGTTCTGGTCTCTATACAAGGTCTAATCCTTAATACAAAGCCTTACTTTAATGAACCTGGATTTGCACGCATGAGTGGTTCAGCAAATGGTGAAATGAAGTCGTTGCAGTATAATGAGGACACATTCATTTTATCATTGAGGACAATGATGTATATGATACGAAGGCCTCCAAAGAATTTTGAGGACTTTGTTATGGGGCATTTCTGCAGCCGAGCTGACGATATTCTGGTGGCATGTAAAGCATACATGGAAGGTGCTCAAGTTGGTTGTTTGGTCAAAGGTGGTGTTCAGGATGTTGATGAGGGTGACAGAAGCTGCTCAAAGCGTTTTAAAGAGTCTTTATCTGGATATATGAATATGATTGTTAGAGAGTTCGCTAAAACTGGAGCAAAGGACATTGATAAATTCCTGCCTCCAGAAACAACACTGAACAAGCCATTGGCTGATTTGCCTGAGGCTGCAACCTGA 2043 0.3975 MDPNVVEIPPPLHHPSQFYDQKKIILHDVIDIDNDDDDSEDVVIIGEKVNNSNKGKTIDAVHGYDNHQVEEMSNNTFCLPGVENFGSFSPIVSSNEDYMDVDEYALLQKQFDNVDIPPGIEAPFTWSPPEYDVGMEKTGNSSLYPWCPVQSNAKISHTTHSFQPSLSLEPNNSKIQGSSVGSSKVQIKMDNVDHSSGMESSSQLFSQVASSKKKFSTSKHRGHTSNVSLGVESSKSHWFLGPFHNKKKPAVGASTNHGFIDKSEAVNLSHAVEPLGQIRSAKKAGGSSSHHSNFIGHHGLVYPPVIESGKPWWKNSHKVKPLFPNHHTHTNPIYYPFDPHLDHPEHVLDNTWVHDSVEDGNNGTALDGPLVTISDEARDEILRKFQSFKQFDTVEDTSDHYYIRNNSSMEQRPKNWTKKIQEEWKILEKDLPDSIFVRVYESRMDLLRAVIIGAEGTPYHDGLFFFDVFFPSGYPNVPPQVHYHSGGLRLNPNLYHCGKVCLSLLNTWSGNKNERWLPGVSTILQVLVSIQGLILNTKPYFNEPGFARMSGSANGEMKSLQYNEDTFILSLRTMMYMIRRPPKNFEDFVMGHFCSRADDILVACKAYMEGAQVGCLVKGGVQDVDEGDRSCSKRFKESLSGYMNMIVREFAKTGAKDIDKFLPPETTLNKPLADLPEAAT* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0392 680 MobiDBLite consensus disorder prediction 162 184 - -
Apr2g0392 680 Gene3D Ubiquitin Conjugating Enzyme 374 653 IPR016135 -
Apr2g0392 680 Pfam Ubiquitin-conjugating enzyme 420 540 IPR000608 -
Apr2g0392 680 SUPERFAMILY UBC-like 404 582 IPR016135 -
Apr2g0392 680 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 19 665 - -
Apr2g0392 680 SMART ubc_7 418 575 - -
Apr2g0392 680 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 19 665 - -
Apr2g0392 680 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 415 575 IPR000608 -
Apr2g0392 680 CDD UBCc 417 550 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0392 Apr-Chr2 4612734 4618596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0392 348 663 Miscellaneous Gene Families AT2G33770 45.912 3.20e-85 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0392 K10581 - gmx:100810772 980.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0392 2 4612734 4618596 Apr2g0392 2 4612734 4618596 ECH