Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0375 ATGGGAGAACGTTGTAGACATTTTTCCATTGAGGAATTGCCATCACATTTGGTTTTAGAAATTCTGTGTTCGGGAAGGCTCAGTGCAAAAGACCTTGTTTGTTTAGAATTGACTTCCAAAACTTTTGGTGGTAGTCATGGCTTGTACCCTTTCAAGTTTAAGTCCTTGATTGACTTTGCGGCATTTCAATTGTGTGCCTCCCATGTTATCCATTCTAGGATGGATTTGAATGCTCAGAGGGAGTTATACGATCGATGTGAAGGAAATTGGAAGCGAGTTTTGAGGTTCTTGCAGAGTGTGGAACAATCCTCAACATTGGTTGAGACATCATCAGGCAATGTATTCACATGTGGAGATAATTCATCTTCTTGCTGTGGGCATAGAGATACAAGTCGACCAATTTTCAGGCCTCGTCTTGTTGAATCACTGAAAGGGATTCCTTGCAAACAGGTTGCAGCTGGGCTTAACTTCACAGTCTTCCTCACTAGACAAGGTCATGTTTATACATCTGGAACCAACACACATGGGCAACTTGGTCATGGTGACACTCAGGACAGACCAACCCCCAAAATTATTGAAGCCCTTGGTAATGTTGGTTCTGTTGTTCAGATTGCTGCTGGACCAAGCTATATCTTATCTGTAACAGAAAATGGAGCAGTATACTCCTTTGGATCAGGTGCTAATTTCTGTCTTGGACATGGTGAGCAACACAATGAGCTTCAGCCACGTGCTATACAGAAATTCAGAAGGAAAGGTGTTCATATTGTCCGTGTATCTGCTGGGGATGAGCATGCAGTGGCACTTGATTCAAATGGATTTGTATATACATGGGGCAAGGGATACTGTGGTGCTTTAGGCCATGGAGATGAGATTGAGAAGACAACTCCAGAGATATTGACTAGTCTCAAGAATCACTTAGCTGTTCAGGTCTGTGCAAGAAAGAGGAAAACATTTGTTCTAGTTGATTCTGGATCAGTCTATGGCTTTGGCTCCATGGGATTCGGTAGCCTGGGATTTTTGGATAGAAGGATATCTGATAAAGTCTTGAAACCTCGAATCTTGGATACCTTGAGAGCTCACCGTGTTTCTCAAATAAGCACTGGCTTGTATCACACTGTGGTAATCACTAGCCGTGGAAAGATATTTGGCTTTGGAGACAACGAAAGAGCACAACTTGGTCATGACACATTAAGAAGCTGCCTTGAGCCCATTGAAATTTTCATTAGAGATTCATCTGAAGAAGTAGATCCTATAGAAAGCATCTGA 1266 0.4234 MGERCRHFSIEELPSHLVLEILCSGRLSAKDLVCLELTSKTFGGSHGLYPFKFKSLIDFAAFQLCASHVIHSRMDLNAQRELYDRCEGNWKRVLRFLQSVEQSSTLVETSSGNVFTCGDNSSSCCGHRDTSRPIFRPRLVESLKGIPCKQVAAGLNFTVFLTRQGHVYTSGTNTHGQLGHGDTQDRPTPKIIEALGNVGSVVQIAAGPSYILSVTENGAVYSFGSGANFCLGHGEQHNELQPRAIQKFRRKGVHIVRVSAGDEHAVALDSNGFVYTWGKGYCGALGHGDEIEKTTPEILTSLKNHLAVQVCARKRKTFVLVDSGSVYGFGSMGFGSLGFLDRRISDKVLKPRILDTLRAHRVSQISTGLYHTVVITSRGKIFGFGDNERAQLGHDTLRSCLEPIEIFIRDSSEEVDPIESI* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0375 421 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 324 378 IPR000408 -
Apr2g0375 421 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 165 217 IPR000408 -
Apr2g0375 421 Gene3D - 91 198 IPR009091 -
Apr2g0375 421 Gene3D - 199 418 IPR009091 -
Apr2g0375 421 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 258 268 IPR000408 -
Apr2g0375 421 Pfam Regulator of chromosome condensation (RCC1) repeat 362 390 - -
Apr2g0375 421 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 365 375 IPR000408 -
Apr2g0375 421 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 272 323 IPR000408 -
Apr2g0375 421 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 112 164 IPR000408 -
Apr2g0375 421 PANTHER BNAA01G28890D PROTEIN 9 114 - -
Apr2g0375 421 PANTHER BNAA01G28890D PROTEIN 111 408 - -
Apr2g0375 421 PRINTS Chromosome condensation regulator RCC1 signature 219 235 IPR000408 -
Apr2g0375 421 PRINTS Chromosome condensation regulator RCC1 signature 255 268 IPR000408 -
Apr2g0375 421 PRINTS Chromosome condensation regulator RCC1 signature 274 290 IPR000408 -
Apr2g0375 421 PRINTS Chromosome condensation regulator RCC1 signature 365 381 IPR000408 -
Apr2g0375 421 PRINTS Chromosome condensation regulator RCC1 signature 381 395 IPR000408 -
Apr2g0375 421 SUPERFAMILY RCC1/BLIP-II 102 408 IPR009091 -
Apr2g0375 421 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 218 271 IPR000408 -
Apr2g0375 421 Pfam Regulator of chromosome condensation (RCC1) repeat 271 312 IPR000408 -
Apr2g0375 421 Pfam Regulator of chromosome condensation (RCC1) repeat 217 268 IPR000408 -
Apr2g0375 421 Pfam Regulator of chromosome condensation (RCC1) repeat 111 161 IPR000408 -
Apr2g0375 421 Pfam Regulator of chromosome condensation (RCC1) repeat 165 208 IPR000408 -
Apr2g0375 421 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 9 114 - -
Apr2g0375 421 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 111 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0375 Apr-Chr2 4496420 4502292 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0375 - - gmx:100786672 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0375 2 4496420 4502292 Apr2g0375 2 4496420 4502292 ECH