Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0298 ATGGATGAAGGTGAGGGAGGGTACGGCGAGAGTGGAGATCCCATGGATCAGTTCCACCGTAACGAAGCTATATCCGCAGTTGCTGACGAGGGTTTCTTAGGCGAGGAAGACGACGATTACGAAGACCTCTACAACGATGTGAATGTCGGCGAAGGGTTTCTCCAATCGTTGCGAAAGAATGAGGATTCCGGGTTTCGAAACGACGACGTCGATGAGAAGAAGCCGCAGCAGGCAGCTCAGGATCCGGTTGGGGTTTCGATTCCCGGTGTCGGTGATGGTGGTGACGGTGCGGTTGTGGAGCCTAGGGTTTCTGGGAGGGTTGATGGATTTCAGAATCAGGGGTTTAGAGGGAGTAATCCTAATGGTGGAGGTGGATCGGGGAGTGGGGGTGGGATTAGGGTTGAATTAGGGCAACCATCTGGGAAAATTAGTGAAATTGAGGAGCAGAGTGGTAATGATGGGGGTGCAGTGCAGGGGATTGGGCAGCAACCGCAAGGTGGGGTTGTTGGGAATGTGGGAAATGAGGGATTGGCAAGGCAGGGTCAAGGTGGTGGTGGAGGTGGCGTGGCTGCAGGAGGTGGTGGTGGTGGTGGTGGTGGTGCTGCTGCTCCTGGTGGAGGTGGTGGTGGTGGGGGCACTATATTGTTTGTTGGTGATTTGCACTGGTGGACTACGGACGCTGAGCTGGAAGCCGAGCTTTCTAAGTATGGGCCTGTGAAGGAGGTGAAGTTTTTCGATGAGAAGGCGAGTGGGAAATCAAAAGGGTATTGCCAGGTTGAGTTTTATGAAGCTTATGCTGCAACTGCTTGTAAGGAAGGGATGAATGGGCATGTTTTTAATGGGAGGCCGTGCGTTGTTGCGTTTGCGTCGCCCTTTACTGTTAAGAAAATGGGAGAGGCCCAGATAAGTAGGAATCAACAGATGAATCAATCTGCTGTTAACCAGGGAAGGAGGGGGCCCGCTGATGCGGGGGCCAAGCCTGGTGGTAGTAATATTTCGACTGGTGGTAATTACCAAGGAGGGGGGGATGGCAATAGAGGTTATGGTAGAGGAGGTAACTGGGGGAGAGGGAACAATCCTGCGATGGGAAATAGGGGGCCTGTTAATCCAATGAGGAATAGGGGTGGTGGTGGGATGGGTGGGAGAGGTCTAATGGGTAACGGTGGGAATGGATTTGGACAGGGTATTGGTGGTACCCCACCACTGTTGCATCCTCAGTCAATGATGAATCAGGGTTTTGATCCTGCATTTGGCGGTCCCATGGGTAGAATGGGTAGCTATGGAGGCTTTCCTGGTGCTCCAACTCCTCCATTCTCTGGGATTTTACCTTCATTCCCTGGTGTTGGAGGCGTTGGTTTGCCTGGAGTAGCACCTCATGTTAATCCAGCCTTTTTTGGGAGAGGGATGCCTGTGAATGGTATGGGTATGATGCCAACATCAGGTATTGATGGTCCTAACATGGGAATGTGGTCGGATCCAAACATGGGTGGATGGGGTGGCGAGGAGCATGGTGGTGGCAGGGCTGGAGAATCAAGCTATGGCGAGGAAGCTGCATCAGATCATCAGTACGGTGAAGTGAGTCATGACAGAGCAGGGTGGCCTAATGCTATGAGGGAAAAAGATAGAGGATCGGAAAGGGACTGGTCTGGTTCTTCTGAGCGAAGGTATAGGGATGATAGGGATCAAGGATATGAGAGAGATGCACCTAGAGAAAAAGATGCGGGACACGATCATGAATGGTCAGAACGAAGGCATCGGGATGATAGAGAAATGGGCCGAGAACGATCTCGTGACCGTGATCGGGAACGATCTCGAGACCGTGATCGTGACCGTGAAAGGGATCGTGATAGAGACCGTGAGCGGGACAGGTACAGGGAGGATAGAGACAGATATGCAGATCATCATAGGTACAGAGACCGTGAAGCAGAGCATGAGGATGAGTGGGAACGGGGACGGTCGTCAAGGACTCATAGCAAATCACGATTATCACAAGAGGAGGAACACCATTCAAGGCCAAAGGATGCTGATTATGGGAAGAGGAGGAGGCTTACCTCTGAGTAA 2061 0.5216 MDEGEGGYGESGDPMDQFHRNEAISAVADEGFLGEEDDDYEDLYNDVNVGEGFLQSLRKNEDSGFRNDDVDEKKPQQAAQDPVGVSIPGVGDGGDGAVVEPRVSGRVDGFQNQGFRGSNPNGGGGSGSGGGIRVELGQPSGKISEIEEQSGNDGGAVQGIGQQPQGGVVGNVGNEGLARQGQGGGGGGVAAGGGGGGGGGAAAPGGGGGGGGTILFVGDLHWWTTDAELEAELSKYGPVKEVKFFDEKASGKSKGYCQVEFYEAYAATACKEGMNGHVFNGRPCVVAFASPFTVKKMGEAQISRNQQMNQSAVNQGRRGPADAGAKPGGSNISTGGNYQGGGDGNRGYGRGGNWGRGNNPAMGNRGPVNPMRNRGGGGMGGRGLMGNGGNGFGQGIGGTPPLLHPQSMMNQGFDPAFGGPMGRMGSYGGFPGAPTPPFSGILPSFPGVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPTSGIDGPNMGMWSDPNMGGWGGEEHGGGRAGESSYGEEAASDHQYGEVSHDRAGWPNAMREKDRGSERDWSGSSERRYRDDRDQGYERDAPREKDAGHDHEWSERRHRDDREMGRERSRDRDRERSRDRDRDRERDRDRDRERDRYREDRDRYADHHRYRDREAEHEDEWERGRSSRTHSKSRLSQEEEHHSRPKDADYGKRRRLTSE* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0298 686 MobiDBLite consensus disorder prediction 484 686 - -
Apr2g0298 686 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723
Apr2g0298 686 MobiDBLite consensus disorder prediction 61 76 - -
Apr2g0298 686 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 1 685 IPR034772 -
Apr2g0298 686 MobiDBLite consensus disorder prediction 1 23 - -
Apr2g0298 686 MobiDBLite consensus disorder prediction 307 368 - -
Apr2g0298 686 MobiDBLite consensus disorder prediction 55 189 - -
Apr2g0298 686 CDD RRM_CFIm68_CFIm59 215 288 - -
Apr2g0298 686 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 1 685 - -
Apr2g0298 686 MobiDBLite consensus disorder prediction 111 125 - -
Apr2g0298 686 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 284 IPR000504 GO:0003723
Apr2g0298 686 MobiDBLite consensus disorder prediction 155 169 - -
Apr2g0298 686 SUPERFAMILY RNA-binding domain, RBD 212 303 IPR035979 GO:0003676
Apr2g0298 686 SMART rrm1_1 214 287 IPR000504 GO:0003723
Apr2g0298 686 Gene3D - 209 353 IPR012677 -
Apr2g0298 686 MobiDBLite consensus disorder prediction 521 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0298 Apr-Chr2 3601644 3604547 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0298 K14398 - gmx:100782869 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0298 2 3601644 3604547 Apr2g0298 2 3601644 3604547 ECH