Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr2g0246 | ATGGTGACAGAGGAAGAAATATCGGAAGCGGTTCAGTCGCTGTTGAAAGAATCGAACCCTAGAAGCCGAAGCTTCACGACGTTGAACCAAGTGGTTCAAGAGCTTCAAGCCAAGCTCGGTCACGACCTCACTCACAAGCTCGATTTCATCACCTCACAGATCAACCTCCTCTTTGGATCCCAACAACCACCGCCGCAAAATCCCCAGAGTCAGTTACCGCAACCGCAACAACCGCCCAAAGACCATTTTGCCCTTCAACAAAACCCTAATTTTCACTCTTCCCCTGCTGTTACTACCGGTTTTCAGACATTCACTTCTAACCCTGTTGCTGCTGATGCTGCACGCGCTGAAGCTCACCATCCTCCTCCTCCTGCTGCTGCTGCTGCTGCTGAGGGCAACGAGATTCCCAAGGAAAGTACTCAAACTAAGGTGAAGAGAAGAGGTGGCCCAGGAGGTCTCAACAAACTTTGTGGTGTTTCACCTGAACTTCAGGTCATTGTTGGCCAGCCAGCATTGCCGCGGACTGAGATTGTGAAACAACTGTGGGCTTACATAAGGAAAAACAATCTCCAAGATCCCAGCAACAAAAGGAAAATAATTTGCAATGATGAGCTGCGTGTGGTGTTTGAGACAGACTGTACTGATATGTTCAAGATGAATAAGTTGCTAGCAAAGCACATAATCCCCCTTGAACCAACCAAGCAGTCTGTGGCAAAGAAGCAAAAAGTAGATGTGGAATCAGGAACAAAAACTGCTGAACCTACTCCCTCTGTAATAATATCTGATGCACTTGCTAACTTCTTTGGGGTTACTGGAAGGGAGATGCTACAATCTGAGGTACTGAGACGTATTTGGGAGTACATAAAAGTCAACCAGCTAGAGTGA | 885 | 0.4712 | MVTEEEISEAVQSLLKESNPRSRSFTTLNQVVQELQAKLGHDLTHKLDFITSQINLLFGSQQPPPQNPQSQLPQPQQPPKDHFALQQNPNFHSSPAVTTGFQTFTSNPVAADAARAEAHHPPPPAAAAAAEGNEIPKESTQTKVKRRGGPGGLNKLCGVSPELQVIVGQPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVFETDCTDMFKMNKLLAKHIIPLEPTKQSVAKKQKVDVESGTKTAEPTPSVIISDALANFFGVTGREMLQSEVLRRIWEYIKVNQLE* | 295 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr2g0246 | 294 | Gene3D | - | 1 | 58 | - | - | |
| Apr2g0246 | 294 | CDD | SWIB-MDM2_like | 157 | 227 | - | - | |
| Apr2g0246 | 294 | ProSiteProfiles | SWIB/MDM2 domain profile. | 152 | 229 | IPR003121 | - | |
| Apr2g0246 | 294 | MobiDBLite | consensus disorder prediction | 76 | 109 | - | - | |
| Apr2g0246 | 294 | SUPERFAMILY | SWIB/MDM2 domain | 146 | 233 | IPR036885 | - | |
| Apr2g0246 | 294 | SUPERFAMILY | DEK C-terminal domain | 3 | 57 | - | - | |
| Apr2g0246 | 294 | PANTHER | SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D | 107 | 294 | - | - | |
| Apr2g0246 | 294 | PANTHER | SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D | 1 | 69 | - | - | |
| Apr2g0246 | 294 | Pfam | SWIB/MDM2 domain | 157 | 227 | IPR003121 | - | |
| Apr2g0246 | 294 | MobiDBLite | consensus disorder prediction | 58 | 153 | - | - | |
| Apr2g0246 | 294 | ProSiteProfiles | SWIB/MDM2 domain profile. | 253 | 294 | IPR003121 | - | |
| Apr2g0246 | 294 | SMART | swib_2 | 153 | 232 | IPR019835 | - | |
| Apr2g0246 | 294 | Pfam | DEK C terminal domain | 2 | 58 | IPR014876 | - | |
| Apr2g0246 | 294 | PANTHER | - | 107 | 294 | - | - | |
| Apr2g0246 | 294 | PANTHER | - | 1 | 69 | - | - | |
| Apr2g0246 | 294 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Apr2g0246 | 294 | Gene3D | SWIB/MDM2 domain | 249 | 294 | IPR036885 | - | |
| Apr2g0246 | 294 | Gene3D | SWIB/MDM2 domain | 148 | 238 | IPR036885 | - | |
| Apr2g0246 | 294 | SUPERFAMILY | SWIB/MDM2 domain | 247 | 293 | IPR036885 | - | |
| Apr2g0246 | 294 | CDD | SWIB-MDM2_like | 258 | 293 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr2g0246 | Apr-Chr2 | 3046133 | 3050238 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | SWI/SNF-BAF60b | Apr2g0246 | SWIB | 1.7e-26 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr2g0246 | K15223 | - | gmx:100801960 | 425.631 |
Event-related genes