Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0239 ATGAGTTCGGTGCCAAAGGAAACAATTGAAGTCATTGCACAGAGCATTGGCATCACCAATTTATCCCCCGATGTTGCCCTCGCTCTCGCTCCCGATCTTGAGTATCGAATTCGAGAAATCATGCAGGAGTCAATAAAATGCATGCGCCACTCAATGAGAACGTTTCTCACTACAGATGATGTGGATAGTGCTCTTGCATTGAGAAATTTAGAGCCGCTATATGGTTTCACCTCAAATGATCCTGTGCGGTTTAAAAGGGCTGCTGGACACAAGGATTTGTTCTACATTGATGATAAAGATGTGGATATCAAAGATCTCATTGAAGCTCCTTTACCGAAAGCACCCCTTGATACATCAATAACCAGTCACTGGTTGGCTATTGAAGGTGTCCAACCTGCAATTCCAGAAAATGCTCCAGTTGAAGCTCCCTCTGAGATAAGAAAATCTGAATATAAGGAAGATGGGCTTCCTGTTGATGTTAAATTACCTGTTAAACATGTAATAACAAGGGAGCTTCAGCTTTACTATGAAAAAATAATTGAGCTGACTTTACATAAGCCAGGCTCTATTCCTTTTAGAAGAGCATTGGTTAGCTTGGCAACAGACTCAGGACTCCATCCCTTGATTCCTTATTTTACACGCTTTGTTGCTGATGAGGTGGCACAAAATTTAAATAATTTAACTGTTTTATTTGCCTTGATGCGCCTTGTGCGGAGCCTTTTGCAAAATTCTCACATACACATAGAACTTTATTTACATCAATTGATGCCGCCTATAATTACTTGCGTTGTTGCAAAAAGGATAGGAAACAGAGTATCTGATAATCACTGGGAGCTTAGGAACTTCAGTGCTAATCTTGTTGCTTCAATATGCCAAAGATTTGGGCATGTTTATCACAATCTTCAGCCACGTGTGACAAAGACATTTCTTCATTCTTTCTTGGACCCTTCAAAAGCTCTGCCTCAACACTATGGTGCAATTAAAGGAATAGCAGCTCTTGGATCACGACTGGTTCGCCTGCTTATACTTCCAAATCTTGAGCCATATTTGCATCTTCTTGAGCCAGAAATGCAACTTGAGAAGCAAAGTAATGAAATGAAGAGGCAAGAAGCTTGGCAAGTTTATGGGGCCTTGTTGGATGCAGTAGGTCGATGTATGCATGAGAAGGTCAAAAAGTTCAGCAGTTTGCTCTCTCCTCCAACTGTTAGTTCAAGAAGCACTGGAAAAGCCATGATTGCGATACCAGGCAAACGTAAAGCCAGCACAGACAATCTAATGCAGCAACCTCCATTGAAGAAACTTGCAACAGATGGTCCTGGGGGTGTGGTACCAATGAACTCCATGTCAGTTGACATGCAAGGCTCAACAGGTGGATTTTCCAACATGATGGGGGTTCCCACTGTCGGCATATCATCAATGGGCCGTCAATTATCCAACGACAACGCGCTGGGGAGAGAGATTGGAGATCAGCAAAGGAAGGTGTCTTCCACTCTTGCTCAAGCTTGGAAGGAGGACATGGATGCAGGACATTTGCTGTCATCGGTGTATGAATTGTTTGGCAAAAGGGTGTTGCCATTTGTTCCAAAACCTGAAGCATGTATATTTTTGTAG 1611 0.4252 MSSVPKETIEVIAQSIGITNLSPDVALALAPDLEYRIREIMQESIKCMRHSMRTFLTTDDVDSALALRNLEPLYGFTSNDPVRFKRAAGHKDLFYIDDKDVDIKDLIEAPLPKAPLDTSITSHWLAIEGVQPAIPENAPVEAPSEIRKSEYKEDGLPVDVKLPVKHVITRELQLYYEKIIELTLHKPGSIPFRRALVSLATDSGLHPLIPYFTRFVADEVAQNLNNLTVLFALMRLVRSLLQNSHIHIELYLHQLMPPIITCVVAKRIGNRVSDNHWELRNFSANLVASICQRFGHVYHNLQPRVTKTFLHSFLDPSKALPQHYGAIKGIAALGSRLVRLLILPNLEPYLHLLEPEMQLEKQSNEMKRQEAWQVYGALLDAVGRCMHEKVKKFSSLLSPPTVSSRSTGKAMIAIPGKRKASTDNLMQQPPLKKLATDGPGGVVPMNSMSVDMQGSTGGFSNMMGVPTVGISSMGRQLSNDNALGREIGDQQRKVSSTLAQAWKEDMDAGHLLSSVYELFGKRVLPFVPKPEACIFL* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0239 536 SUPERFAMILY Histone-fold 2 65 IPR009072 GO:0046982
Apr2g0239 536 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 1 536 - -
Apr2g0239 536 CDD TAF6C 165 381 IPR011442 GO:0006367
Apr2g0239 536 SUPERFAMILY ARM repeat 197 391 IPR016024 -
Apr2g0239 536 Gene3D Histone, subunit A 1 66 IPR009072 GO:0046982
Apr2g0239 536 Pfam TAF6 C-terminal HEAT repeat domain 259 346 IPR011442 GO:0006367
Apr2g0239 536 Pfam TATA box binding protein associated factor (TAF) 1 65 IPR004823 -
Apr2g0239 536 Gene3D - 164 369 IPR046344 GO:0006367
Apr2g0239 536 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 1 536 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
Apr2g0239 536 SMART TAF_cls 2 68 IPR004823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0239 Apr-Chr2 2997382 3005637 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0239 K03131 - gmx:100799998 915.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0239 2 2997382 3005637 Apr2g0239 2 2997382 3005637 ECH