Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0230 ATGTTCGCTTACAGGGTCTTGTCCCGTTCCTCTGCCACCGTTTCTCGAAGCTTCACGCTTCTCTCTGTTTCAAGGAACTCCCAAATATCCACCAGCCTTTCCAATCAGTTCCATTCCCTCCTTCATCAATCACCTAATAAGCTGATTCCAATTCAAGCTAATTTGTTGAGTCAAGTAAATTCATCCTTGACTTGGAGATTTGGAGTTTCTTCATCGGCTTCACCTGAACATGCAAGTGATGACCCTGAAAAAACAAGTGAAGAAGCTAAGGTAACTGATGAACGAGCCGAAGCTGCGGATCGAACCAAAGAATCAGATGTAGAGAGTGAATGTGATCTATCAAGAGATGATTTGATAAAGCTTGTTTCTGAGAAGGCAGAACTTTTGAAGTTGAAGCACAAGGAGATTGAGAAAATGCAGGACAAAGTTTTGCGTACTTATGCTGAGATGGAGAATGTCATGGACAGGACAAGACGTGAAGCAGAGAATTCAAAAAAATTTGCCATACAGAGTTTTGCGAAGAGTTTACTAGATGTTGCTGACAATTTGGGAAGGGCTTCCTCAGTTGTAAAGGACAGCTTTTCAAAAATTGAATCACCTGCGGACTCTGCTGAAGCAGCACAACTCCTAAAAACACTTCTAGAAGGTGTTGAAATGACAGAGAAACAACTTTCAGAGGTGCTAAAAAAGTTTGGTGTAGAAAAATTTGATCCCACAAATGAGGCATTTGATCCACACAGGCATAATGCCATCTTCCAGATACCTGATGCTTCTAAGCCCCCAGGCACTGTCGGAATTGTTCTGAAGGCTGGATATACACTTTATGATCGTGTTATTCGTCCAGCAGAAGTTGGTGTAACCCAATAA 867 0.4187 MFAYRVLSRSSATVSRSFTLLSVSRNSQISTSLSNQFHSLLHQSPNKLIPIQANLLSQVNSSLTWRFGVSSSASPEHASDDPEKTSEEAKVTDERAEAADRTKESDVESECDLSRDDLIKLVSEKAELLKLKHKEIEKMQDKVLRTYAEMENVMDRTRREAENSKKFAIQSFAKSLLDVADNLGRASSVVKDSFSKIESPADSAEAAQLLKTLLEGVEMTEKQLSEVLKKFGVEKFDPTNEAFDPHRHNAIFQIPDASKPPGTVGIVLKAGYTLYDRVIRPAEVGVTQ* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0230 288 PANTHER GRPE PROTEIN HOMOLOG 8 287 - -
Apr2g0230 288 ProSitePatterns grpE protein signature. 243 286 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr2g0230 288 MobiDBLite consensus disorder prediction 77 109 - -
Apr2g0230 288 PRINTS GrpE protein signature 144 160 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr2g0230 288 PRINTS GrpE protein signature 240 255 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr2g0230 288 PRINTS GrpE protein signature 267 286 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr2g0230 288 PANTHER GRPE PROTEIN 8 287 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr2g0230 288 Pfam GrpE 122 287 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr2g0230 288 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 126 232 IPR013805 -
Apr2g0230 288 MobiDBLite consensus disorder prediction 71 109 - -
Apr2g0230 288 Hamap Protein GrpE [grpE]. 80 288 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr2g0230 288 Gene3D Head domain of nucleotide exchange factor GrpE 232 287 IPR009012 GO:0006457
Apr2g0230 288 Gene3D - 118 231 IPR013805 -
Apr2g0230 288 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 233 287 IPR009012 GO:0006457
Apr2g0230 288 CDD GrpE 137 286 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0230 Apr-Chr2 2916461 2919361 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0230 K03687 - gmx:100812682 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0230 2 2916461 2919361 Apr2g0230 2 2916461 2919361 ECH