Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0228 ATGGAACTTGACATCGTACCATACGGTTCATATTCCACAGATCACCAGAACCTTTATCAAGAGTGGTTCAATTATGCAGATGAAGATGGGGATGGTCGTTTCACGGGGAATGAAGCCATCAAATTTTTTGCCATGTCAAACTTGTCTCGGCAAGAACTCAAGCAGGTGTGGGCCATTGCAGATTCAAAACGAGAAGGATATCTTGGTTTCAAAGACTTTGTCATCGCTATGCAGCTCATTTCTTTGGGACAATCTGGGCGCCCAATATCACATGATATGCTGAGTAGAGATGTTTTACAATTTTCAAAACCACCTAGAATGGAAGGTTTGGATGCATTACTTGCAAAGAAAAGGCATAAACAGAAAGATAAACATTTGAATGTTAGTCCTCAGCCATCACCCTCAAGTAATTGGTTTGATTCAAAGTCAGTAAAAAAGGTGCCTGCTTCCTCAGTGACATCAGTTATAGATGGTTTGAAGAGACTTTACCTTCAGAAGTTGAAGCCTTTAGAAGTTACTTACCGCTTTAATGATTTTGTATCTCCTCTCCTGACAAATAGTGATTTTGATGCCAAACCTATGGTTTTGCTTTTGGGTCAATACTCAACTGGGAAAACAACATTTATTAGACATATGCTTAAATCCAATTATCCAGGAGCTCATATTGGACCAGAGCCAACAACTGATAGGTTTGTTGTTGTCATGTCTGGTCCTGATGAGAGAAGTATTCCCGGCAATACCGTTGCTGTCCAAGCAGACATGCCATTTGGTGGTCTCACATCTTTTGGCACAGCATTTTTGTCCAAGTTTGAGTGTTCTCAAATGCCTCATCCTCTTCTGGAGCATATCACATTTGTAGACAGCCCTGGAGTTTTATCTGGAGAAAAGCAAAGGACACAAAGACAATATGATTTTACAGGAGTAACATCTTGGTTTGCTGCTAAGTGTGATCTAATACTCCTTCTGTTTGATCCGCACAAACTTGATGTCAGTGATGAATTCAAGCGTGTAATTGCATCTCTTCGGGGACATGATGACAAAATTCGAGTGGTTTTAAACAAAGCAGACCAAGTTGATACACAACAACTAATGAGGATTTATGGTGCATTAATGTGGTCACTTGGAAAGGTGTTGAATGTTCCTGAGGTCTCACGGGTGTACATTGGCTCCTTCAACGACAAGCCTCTAAACGATGACGTCAATGGTCCTCTTGGTAATGAACTCTTTGAAAAAGAACAGGATGACCTTCTTTCAGATCTGAAAGATATACCAAAGAAGGCTTGTGATAGAAAAATCAATGAATTTGTTAAACGAGCCAGAGCTGCCAAGATACATGCTTATATTATTAGTCATCTTAAGAAGCAGATGCCTGCTATGATTGGCAAATCTAAAGCTCAGAAAAAGCTCATTGATAATATGGAAACTGAATTTGCAAAGGTACAAAGGGAGTTCCATCTACCACCTGGTGACTTCCCTAATGTTGAGCACTTCAAAGAGACCTTGAGTGGTTACAACTTTGACAAGTTTGAGAAATTGAAACCAAGAATGATACAAGCAGTGGATGACATGCTTGCTCATGATATTCCTAACCTTTTGAAGACTTTTAGGAATCCCTATGGCTAA 1623 0.3986 MELDIVPYGSYSTDHQNLYQEWFNYADEDGDGRFTGNEAIKFFAMSNLSRQELKQVWAIADSKREGYLGFKDFVIAMQLISLGQSGRPISHDMLSRDVLQFSKPPRMEGLDALLAKKRHKQKDKHLNVSPQPSPSSNWFDSKSVKKVPASSVTSVIDGLKRLYLQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVLLLGQYSTGKTTFIRHMLKSNYPGAHIGPEPTTDRFVVVMSGPDERSIPGNTVAVQADMPFGGLTSFGTAFLSKFECSQMPHPLLEHITFVDSPGVLSGEKQRTQRQYDFTGVTSWFAAKCDLILLLFDPHKLDVSDEFKRVIASLRGHDDKIRVVLNKADQVDTQQLMRIYGALMWSLGKVLNVPEVSRVYIGSFNDKPLNDDVNGPLGNELFEKEQDDLLSDLKDIPKKACDRKINEFVKRARAAKIHAYIISHLKKQMPAMIGKSKAQKKLIDNMETEFAKVQREFHLPPGDFPNVEHFKETLSGYNFDKFEKLKPRMIQAVDDMLAHDIPNLLKTFRNPYG* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0228 540 Coils Coil 463 483 - -
Apr2g0228 540 SMART eh_3 12 103 IPR000261 GO:0005515
Apr2g0228 540 Gene3D - 11 108 - -
Apr2g0228 540 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Apr2g0228 540 SUPERFAMILY EF-hand 12 93 IPR011992 -
Apr2g0228 540 Gene3D - 159 531 - -
Apr2g0228 540 SMART efh_1 18 46 IPR002048 GO:0005509
Apr2g0228 540 SMART efh_1 52 80 IPR002048 GO:0005509
Apr2g0228 540 CDD EHD 194 438 - -
Apr2g0228 540 Pfam Dynamin family 195 354 IPR045063 -
Apr2g0228 540 Pfam Domain of unknown function (DUF5600) 430 531 IPR040990 -
Apr2g0228 540 Gene3D - 195 423 IPR027417 -
Apr2g0228 540 Pfam Cytoskeletal-regulatory complex EF hand 19 80 IPR000261 GO:0005515
Apr2g0228 540 PANTHER CALCIUM-BINDING EF HAND PROTEIN 19 538 - -
Apr2g0228 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 460 IPR027417 -
Apr2g0228 540 MobiDBLite consensus disorder prediction 127 141 - -
Apr2g0228 540 MobiDBLite consensus disorder prediction 121 141 - -
Apr2g0228 540 PANTHER EH DOMAIN 19 538 - -
Apr2g0228 540 CDD EH 19 85 IPR000261 GO:0005515
Apr2g0228 540 Pfam N-terminal EH-domain containing protein 158 190 IPR031692 -
Apr2g0228 540 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 189 425 IPR030381 GO:0005525
Apr2g0228 540 ProSiteProfiles EH domain profile. 15 86 IPR000261 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0228 Apr-Chr2 2904605 2911674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0228 1 539 EF-hand Containing Proteins AT3G20290 78.676 0.0 878
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0228 K12483 - gmx:100816958 969.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0228 2 2904605 2911674 Apr2g0228 2 2904605 2911674 ECH