Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2559 ATGGCTGGAGGGTCTTTCACAGCTGATACTGTGACCAAGGAAAGGGCAGAACAATACAAAGGAAGAGTCACTGCTTACGTTATCATCGCTTGCATTGTTGCTGCCACAGGGGGGTCTCTCTTTGGCTATGATATTGGGATTTCAGGGGGGGTTACTTCAATGGATGATTTTCTTAAGGATTTCTTCCCCTCAGTATACAGACATAAGATGCATGCGCATGAAAACAACTACTGCAAGTATGACAATCAGGGCCTTGCTGCATTTACATCTTCGCTATACATTGCTGGTTTAATTGCATCCTTGATGGCATCTCCCGTTACAAGGAGGCATGGACGTAGGGCAAGTATCATAGGCGGTGGTATCAGCTTTCTTATTGGATCAGCTTTGAATGCTTCTGCTGTTAACCTGGCGATGCTGATCTTAGGCAGGGTTATGCTCGGTGTTGGCATTGGGTTTGGAAATCAGGCTATTCCGCTTTATTTGTCCGAGATGGCTCCGACACACCTTCGAGGAGGCCTGAACATGATGTTTCAAGTAGCAACCACTTTTGGGATTTTCACAGCTAACATGGTCAATTATGGAACGCAGCGGATCAAGCCTTGGGGTTGGAGGCTGTCCCTAGGCTTGGCTGCAGTACCAGCTCTTTTGATGACAGTGGGAGGAATATTTCTTCCTGAGACTCCAAACAGCTTAATAGAACGAGGATCAAAAGAAAAAGGAAGGAAGCTGCTAGAAAAAATCAGAGGAACTACCGAGGTTGATGCAGAGTTTCAAGATATGGTTGATGCAAGTGAGTTGGCAAACTCAATACAGAACCCATTTCGTAACATAATTGAAAGAAGGAACAGGCCAGAGTTGGTGATGGCAATCTTCATGCCTACTTTCCAGATACTTACTGGCATAAATTCCATTCTCTTCTATGCTCCAGTGCTGTTTCAAAGCATGGGATTTGCAGGTGACGCATCGCTCTACTCTTCAGCGTTGACTGGTGGAGTTCTTGCCTTTTCCACATTCATATCCATTGCAACAGTAGATAGATTGGGCAGGAGAGTTCTTCTTATCAGTGGTGGAATACAAATGATCACATGCCAGCAGATTATAGTGGCCATAATTTTGGGGATCAAGTTTGGAGAAAACCAAGAATTGTCCAAAGGCTTTTCAATATTGGTTGTTTTTGTGATTTGCCTATTTGTTTTGGCTTTTGGATGGTCATGGGGCCCACTTGGCTGGACAATCCCAAGTGAGATATTTCCGTTGGAAATCCGGTCAGCAGGGCAGAGCATCACAGTTGCTGTAAACCTTCTCTTCACTTTCATAATTGCCCAGGCCTTCCTTGCTCTTCTCTGTTCATTCAAGTTTGGAATCTTTCTCTTCTTTGCTGGTTGGATTACCATTATGACCATATTTGTTTATGTGTTCCTACCTGAAACCAAAGGGATTCCTATTGAAGAGATGACATTTATGTGGAGAAGGCACTGGTTCTGGAAAAGGATACTGCCTGATAACTGA 1509 0.4414 MAGGSFTADTVTKERAEQYKGRVTAYVIIACIVAATGGSLFGYDIGISGGVTSMDDFLKDFFPSVYRHKMHAHENNYCKYDNQGLAAFTSSLYIAGLIASLMASPVTRRHGRRASIIGGGISFLIGSALNASAVNLAMLILGRVMLGVGIGFGNQAIPLYLSEMAPTHLRGGLNMMFQVATTFGIFTANMVNYGTQRIKPWGWRLSLGLAAVPALLMTVGGIFLPETPNSLIERGSKEKGRKLLEKIRGTTEVDAEFQDMVDASELANSIQNPFRNIIERRNRPELVMAIFMPTFQILTGINSILFYAPVLFQSMGFAGDASLYSSALTGGVLAFSTFISIATVDRLGRRVLLISGGIQMITCQQIIVAIILGIKFGENQELSKGFSILVVFVICLFVLAFGWSWGPLGWTIPSEIFPLEIRSAGQSITVAVNLLFTFIIAQAFLALLCSFKFGIFLFFAGWITIMTIFVYVFLPETKGIPIEEMTFMWRRHWFWKRILPDN* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2559 502 Gene3D MFS general substrate transporter like domains 19 492 IPR036259 -
Apr1g2559 502 PANTHER - 4 500 - -
Apr1g2559 502 PRINTS Sugar transporter signature 38 48 IPR003663 GO:0016020|GO:0022857|GO:0055085
Apr1g2559 502 PRINTS Sugar transporter signature 140 159 IPR003663 GO:0016020|GO:0022857|GO:0055085
Apr1g2559 502 PRINTS Sugar transporter signature 296 306 IPR003663 GO:0016020|GO:0022857|GO:0055085
Apr1g2559 502 PRINTS Sugar transporter signature 391 412 IPR003663 GO:0016020|GO:0022857|GO:0055085
Apr1g2559 502 PRINTS Sugar transporter signature 414 426 IPR003663 GO:0016020|GO:0022857|GO:0055085
Apr1g2559 502 CDD MFS_STP 33 476 IPR044778 GO:0015145|GO:0015749
Apr1g2559 502 ProSitePatterns Sugar transport proteins signature 2. 145 170 IPR005829 GO:0016021|GO:0022857|GO:0055085
Apr1g2559 502 ProSiteProfiles Major facilitator superfamily (MFS) profile. 30 478 IPR020846 GO:0022857
Apr1g2559 502 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 4 500 IPR045262 GO:0015144
Apr1g2559 502 ProSitePatterns Sugar transport proteins signature 1. 340 357 IPR005829 GO:0016021|GO:0022857|GO:0055085
Apr1g2559 502 SUPERFAMILY MFS general substrate transporter 20 484 IPR036259 -
Apr1g2559 502 TIGRFAM SP: MFS transporter, sugar porter (SP) family 21 485 IPR003663 GO:0016020|GO:0022857|GO:0055085
Apr1g2559 502 Pfam Sugar (and other) transporter 31 489 IPR005828 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2559 Apr-Chr1 35100859 35105023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2559 1 501 Organic Solute Cotransporters AT4G02050 79.641 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2559 K24193 - gmx:100820434 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2559 1 35100859 35105023 Apr1g2559 1 35100859 35105023 ECH