Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2539 ATGGCGAAATTGAAGGTAGGAGGAACGTGGGGAGGGGTGTTGGAAGACGTGGACCTGCACGCGTGGACCATCGCCACGCTCCGTCAAGAAGTCGCTACCCGATCCAACTCTCCCCCTGACTCCATCAATCTCATATGCGCCGGCAAGATTCTCAAAGACGACGCCGTTTCATCCCCACAATCCTTGGCCCAACACGGCATCAAAAACAACTCCAAAATCCTCGCCACGCGCCTCTCCCCTCAACAAGAAGGAGTCTCCCTCCTCGCCGAAGAACAACGCTCTCAGAGACTCGCACGCATCAGGGCAGCTGCCACTGCTATGGCGGAACGCCACGCCGAAGGTTCGTTGCCTTTGGAAGACTTCAATATTGAAGTGGAAGATCAGAGTGGACAGAAAGTGCGTTTAGGGTCTGAGACTGATCAGAGGGCAGTGATGATGGGACTTATGCTTCATGCCAAGGGGAAGCGTCTTGTAAGACAAGGGAATTACAAAGATGCACTCGAAGTCCTTAGCATGGGAGAGGAGGCGTTCTCTCTTTGTGATCCGAAAGTCATTGAGCTTATTGATAATGTTCCGATACTGCAAATAGACATGGTGTGGTGCTACTTTATGATACGGGACATCAGATGGCTCTCGGATGCAGGGAAGCGTCTTGAAATGGCTAGGGTGGGAATTGAACGTGCCCATGGAAAGGATTCTCTCCGCCTCAGACTCTTACAAGGAGGTCGCTATCCAGAACTTGCACTGCATTTGAGACTAGAGTTGCTTGAAGGGGTGGTGGCATATCATAGTGGCCAGTTGGAGCGATCAAGAGAAGCATTAGCTTCTGCAAAAGCAAAGTTTGTCCAGCTGCAAGTTCCAGATGAAGCCTTATCTCTCGTTATGAGCATGGGCTTCATTGAACGTGATGCAAAGAGAGCATTACGAATGAACAATCAAGATGTTGCAGGTGCCATTGATTTCCTTGTTGAGGAGAGGGCAAAGAAAATGCAAAAACGTGAGGAAGATATTAAGAGAAGAAATGAGATTAGGGAGCAAAAGATGTATGGGATGACACCCTTAAAGAAAGCTGTGGATCTTGAGAGATTGAAGGAATTGGTCTCTATTGGGTTTGATAAGGAGCTTGCTGCTGAAGCCCTTAGAAAAAATGAAAACGATTCTCAGAAGGCATTGGATGATTTGACAAATCCAGAAACTAATTCTTCTTTACAGGTTAATATCGAGACAAGGAAAAGGAAGAGAGAGAAACAAGCAAAAGATTCTGCTATTGAAAAAGTTGTGCAAATGGGTTTTGAAAGATCAATAGTGGTTGCTGCTTTTGAGGCTGGTGGTACCTTAGAACAAGTATTGCAAAGACTGACAGCACAACCTGATACTGATCCCACATCTGCTGATGTAAATACGCAACCTCAAGCAACTGCTGCTCCCCATGGCAGTGCAAGTTCATCTGCTCCTGTATCAGACAATGTTAATTCTGATATGCTAGATATGATGAATGAGGTTGAAGATCCATCTGATTACAGTAAAACAGAAGAACGAGATATAGAGATGGAAGATGAGCTCTCTGCAGATATAGCAAAAGCAGATGCCTTAGCGGATTACGACATTGACATTAATGTAGAAGGGGAAGCCATAACTGAGTACATCGCTTTAGTTGAGTCAGCAGATAGTTGTGGGAAGGCTGTTCCGTCCCAGTAA 1698 0.4617 MAKLKVGGTWGGVLEDVDLHAWTIATLRQEVATRSNSPPDSINLICAGKILKDDAVSSPQSLAQHGIKNNSKILATRLSPQQEGVSLLAEEQRSQRLARIRAAATAMAERHAEGSLPLEDFNIEVEDQSGQKVRLGSETDQRAVMMGLMLHAKGKRLVRQGNYKDALEVLSMGEEAFSLCDPKVIELIDNVPILQIDMVWCYFMIRDIRWLSDAGKRLEMARVGIERAHGKDSLRLRLLQGGRYPELALHLRLELLEGVVAYHSGQLERSREALASAKAKFVQLQVPDEALSLVMSMGFIERDAKRALRMNNQDVAGAIDFLVEERAKKMQKREEDIKRRNEIREQKMYGMTPLKKAVDLERLKELVSIGFDKELAAEALRKNENDSQKALDDLTNPETNSSLQVNIETRKRKREKQAKDSAIEKVVQMGFERSIVVAAFEAGGTLEQVLQRLTAQPDTDPTSADVNTQPQATAAPHGSASSSAPVSDNVNSDMLDMMNEVEDPSDYSKTEERDIEMEDELSADIAKADALADYDIDINVEGEAITEYIALVESADSCGKAVPSQ* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2539 565 MobiDBLite consensus disorder prediction 387 421 - -
Apr1g2539 565 MobiDBLite consensus disorder prediction 407 421 - -
Apr1g2539 565 MobiDBLite consensus disorder prediction 456 491 - -
Apr1g2539 565 SUPERFAMILY UBA-like 347 396 IPR009060 GO:0005515
Apr1g2539 565 Gene3D - 15 83 - -
Apr1g2539 565 SUPERFAMILY UBA-like 279 326 IPR009060 GO:0005515
Apr1g2539 565 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 285 325 IPR015940 -
Apr1g2539 565 Gene3D - 287 326 - -
Apr1g2539 565 Gene3D - 360 397 - -
Apr1g2539 565 CDD UBA 363 392 - -
Apr1g2539 565 ProSiteProfiles Ubiquitin domain profile. 23 73 IPR000626 GO:0005515
Apr1g2539 565 PANTHER NEDD8 ULTIMATE BUSTER-1 BS4 PROTEIN 21 555 IPR039749 -
Apr1g2539 565 SUPERFAMILY Ubiquitin-like 22 75 IPR029071 -
Apr1g2539 565 MobiDBLite consensus disorder prediction 392 406 - -
Apr1g2539 565 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 357 397 IPR015940 -
Apr1g2539 565 SMART uba_6 287 324 IPR015940 -
Apr1g2539 565 SMART uba_6 419 455 IPR015940 -
Apr1g2539 565 SMART uba_6 359 396 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2539 Apr-Chr1 34940650 34945997 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2539 - - gmx:100792972 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2539 1 34940650 34945997 Apr1g2539 1 34940650 34945997 ECH