Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2525 ATGTGCCCAGAGCAAGATTGTTATATCTATTGTAAGCACAAATCAAATGCCATCCTTAAAAATGAAGAGCAAATTTCCTCAAGGACGATGCCCAAAGATGTAGCATGCGATCAATCTATTGACAACAAAGAATTTCTGGATAAAGAAAACTCTGAATCAGAGCACCAATTTTCTGTGTGTTCCTCTGTCCTGGATAAAATGGAACTAACCAACCCCTTTACAGCAAACTTAGAGACAATTTTTTCGCCTGCTTTTGAGCCCATTGAAGTCCATTCACAACATTATACTGAAAAAGATTCAGGGAGCATTAGTGATACAGACATGGCAGGAGTGGGAGCTGATGAGGGAAGAACCATATGTGGTTATGAAACATGTGACGTATCGGACTTCTACATTTCTGACATGATCATCACGAGCTTACCTTTTGGTGGAAATTCCTTTGATGATGATATCAGTGAATCCAACTGCCTACCTGATTATGGATCTGCCGAGCCATCCATCTTTACTGCATCTGAACAGTACATGATCCTGCCTGCCCTTGAGGATGATGTTAAAGTTGGAAATACTTCTGATATCATATCTTATGAAGAAGCTGTGATGGTTCGAGAAAGTGCTAGCTTGTATTCAGCAATGGGTCAGATAAGGTCCTGCAACCAGGAGTCTGATGTTAAAAGTGACTCAGATAAGTCAGAGTGCTTTGATCCACAGTCATTCATCAAGAATTTACCAGAACTATCAGAAGTTGAAGTAAATGGCCAGCCAGCTCTAATTCCTAATCAATCTCCAAGAAGAAAGTCGATAACACTAGTGCTTGATTTAGATGAGACACTTGTTCATTCTACTTTGGAGCATTGTGATGATGCGGATTTCACTTTTACTGTTTTCTTCAATATGAAAGAGTACACAGTATATGTAAAACAGAGGCCTTATCTCCACACATTCTTGGAGCGAGTATCAGAGATGTTCGAAGTAGTTATTTTTACAGCCAGCCAAAGCATATATGCAAAGCAACTACTTGATATATTGGATCCTGATGGAAGATTTATTTCTCGCCGTATGTACCGAGAATCATGCCTTTTTTCAGATGGAAATTACACAAAAGATCTTACTATATTAGGTGTTGATCTTGCAAAAGTTGCCATAATTGATAATTCACCTCAGGTTTTCCGGTTGCAAGTGAATAATGGTATTCCTATAAAGAGTTGGTTTGATGATCCATTAGATTGTGCACTGATGTCATTACTTCCCTTTCTAGAGACCTTGGCTGATGCTGATGATGTCCGTCCTATCATTGCAAAGAGATATGGTAACAAAGAATAA 1320 0.3886 MCPEQDCYIYCKHKSNAILKNEEQISSRTMPKDVACDQSIDNKEFLDKENSESEHQFSVCSSVLDKMELTNPFTANLETIFSPAFEPIEVHSQHYTEKDSGSISDTDMAGVGADEGRTICGYETCDVSDFYISDMIITSLPFGGNSFDDDISESNCLPDYGSAEPSIFTASEQYMILPALEDDVKVGNTSDIISYEEAVMVRESASLYSAMGQIRSCNQESDVKSDSDKSECFDPQSFIKNLPELSEVEVNGQPALIPNQSPRRKSITLVLDLDETLVHSTLEHCDDADFTFTVFFNMKEYTVYVKQRPYLHTFLERVSEMFEVVIFTASQSIYAKQLLDILDPDGRFISRRMYRESCLFSDGNYTKDLTILGVDLAKVAIIDNSPQVFRLQVNNGIPIKSWFDDPLDCALMSLLPFLETLADADDVRPIIAKRYGNKE* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2525 439 Pfam NLI interacting factor-like phosphatase 268 428 IPR004274 -
Apr1g2525 439 TIGRFAM HIF-SF_euk: dullard-like phosphatase domain 268 431 IPR011948 GO:0016791
Apr1g2525 439 SMART forpap2 265 409 IPR004274 -
Apr1g2525 439 ProSiteProfiles FCP1 homology domain profile. 262 421 IPR004274 -
Apr1g2525 439 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 17 437 - -
Apr1g2525 439 SUPERFAMILY HAD-like 257 432 IPR036412 -
Apr1g2525 439 Gene3D - 252 435 IPR023214 -
Apr1g2525 439 CDD HAD_FCP1-like 267 399 - -
Apr1g2525 439 PANTHER SCP1-LIKE SMALL PHOSPHATASE 4-RELATED 17 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2525 Apr-Chr1 34811574 34820262 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2525 K17616 - gmx:100799803 778.089