Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2512 ATGGAAGGAGGAGTACCAGAAGCTGATGTTTCTGCCTTTAGGGAATGCTTATCCCTATCATATAAGAATCCTTATGTTCTTCGCCTTGCTTTCTCTGCTGGAATTGGAGGCTTTCTCTTTGGCTATGACACTGGAGTCATATCTGGGGCTCTATTGTATATCAGAGATGATTTCAAAGCTGTGGATAGAAAGACATGGCTGCAGGAAGCCATAGTGAGTATGGCACTTGCTGGAGCAATAATAGGAGCTTCAGTTGGTGGATGGATCAATGATCGATTTGGAAGGAAAAAAGCAATCATTCTTGCAGACACCCTCTTTTTTATTGGGTCTGTTGTGATGGCTGCTGCACTCAGCCCAGCTATTCTAATTGTTGGTCGAGTTTTTGTTGGACTTGGTGTTGGAATGGCTTCGATGGCATCTCCTTTATACATCTCCGAAGCATCTCCAACCAGAGTTCGAGGGGCTCTTGTTAGTCTCAATGGATTTCTTATCACTGGAGGACAATTCCTCTCCTATGTTATCAACTTGGCCTTCACTAGTGCACCAGGAACATGGAGGTGGATGTTAGGAGTAGCAGCAGTACCAGCTTTAACACAAATCATACTAATGCTCTTGCTCCCAGAATCACCTCGCTGGTTGTTCCGAAAGGGCAGACAAGATGAAGCTAAAGAAATCTTAAGGAAGATTTACCCTCCCCAGGTTGTTGAAGATGAAATTAATGCACTAAAGGAATCAGTTGAAATGGAAGTAAAGGAAGCTTCAGCTTCAGATAAAGTTAGCATAGTTAAGTTGTTAAAAACTAAAACAGTGAGAAGAGGTTTATATGCAGGAATGGGCCTTCAAATCTTCCAACAATTTGTGGGTATCAATACAGTCATGTACTACAGCCCCACCATTGTTCAATTAGCTGGATTTGCATCCAATAGGGTAGCACTCCTTCTGTCACTAGTCACAGCAGGGCTAAATGCAATTGGCTCTATTTTGAGTATATATTTCATTGACAAGACTGGGAGGAAGAAGCTTTTGTTGTTTAGTTTGTCTGGTGTTGTAGTTTCTCTTGTTGTTTTAACTGTTGTGTTTCATGAGACTACAACTCACTCACCAACTAGGGGCTGTCCAAGCAAATATGGATGGCTTGCACTAATTGGCCTGGCTCTCTATATCATATTCTTCTCACCAGGGATGGGAACAGTTCCATGGGTTGTCAACTCTGAGATATATCCTCTAAGGTATAGAGGAATTTGTGGAGGAATGGCATCTACCTCAAATTGGGTTTCAAATCTCATTGTGGCACAATCCTTTTTATCCTTGACACAAGCTATCGGAACCTCATCCACATTCATGATATTCATATTCATCACTGTTGCAGCCATTATCTTTGTCATTATTTTTGTACCAGAAACCAAAGGACTTCCAATTGAGGAAGTAGAGAACATGCTGCAAAGAAGATCTTTGAACTTCAAGTTTTGGCAAACTAGTTCTGACTCTGATGAAGTACCCAAACATAAAACTCAGTCAGTTTAA 1524 0.4134 MEGGVPEADVSAFRECLSLSYKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKAVDRKTWLQEAIVSMALAGAIIGASVGGWINDRFGRKKAIILADTLFFIGSVVMAAALSPAILIVGRVFVGLGVGMASMASPLYISEASPTRVRGALVSLNGFLITGGQFLSYVINLAFTSAPGTWRWMLGVAAVPALTQIILMLLLPESPRWLFRKGRQDEAKEILRKIYPPQVVEDEINALKESVEMEVKEASASDKVSIVKLLKTKTVRRGLYAGMGLQIFQQFVGINTVMYYSPTIVQLAGFASNRVALLLSLVTAGLNAIGSILSIYFIDKTGRKKLLLFSLSGVVVSLVVLTVVFHETTTHSPTRGCPSKYGWLALIGLALYIIFFSPGMGTVPWVVNSEIYPLRYRGICGGMASTSNWVSNLIVAQSFLSLTQAIGTSSTFMIFIFITVAAIIFVIIFVPETKGLPIEEVENMLQRRSLNFKFWQTSSDSDEVPKHKTQSV* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2512 507 Pfam Sugar (and other) transporter 30 479 IPR005828 GO:0016021|GO:0022857|GO:0055085
Apr1g2512 507 TIGRFAM SP: MFS transporter, sugar porter (SP) family 18 476 IPR003663 GO:0016020|GO:0022857|GO:0055085
Apr1g2512 507 ProSitePatterns Sugar transport proteins signature 2. 128 153 IPR005829 GO:0016021|GO:0022857|GO:0055085
Apr1g2512 507 PRINTS Sugar transporter signature 37 47 IPR003663 GO:0016020|GO:0022857|GO:0055085
Apr1g2512 507 PRINTS Sugar transporter signature 123 142 IPR003663 GO:0016020|GO:0022857|GO:0055085
Apr1g2512 507 PRINTS Sugar transporter signature 284 294 IPR003663 GO:0016020|GO:0022857|GO:0055085
Apr1g2512 507 PRINTS Sugar transporter signature 381 402 IPR003663 GO:0016020|GO:0022857|GO:0055085
Apr1g2512 507 PRINTS Sugar transporter signature 404 416 IPR003663 GO:0016020|GO:0022857|GO:0055085
Apr1g2512 507 Gene3D MFS general substrate transporter like domains 20 484 IPR036259 -
Apr1g2512 507 ProSiteProfiles Major facilitator superfamily (MFS) profile. 29 469 IPR020846 GO:0022857
Apr1g2512 507 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 1 369 - -
Apr1g2512 507 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 372 495 - -
Apr1g2512 507 PANTHER GENERAL SUBSTRATE TRANSPORTER 372 495 - -
Apr1g2512 507 PANTHER GENERAL SUBSTRATE TRANSPORTER 1 369 - -
Apr1g2512 507 SUPERFAMILY MFS general substrate transporter 21 477 IPR036259 -
Apr1g2512 507 CDD MFS_HMIT_like 32 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2512 Apr-Chr1 34731616 34736911 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2512 361 494 Organic Solute Cotransporters AT1G30220 70.149 2.57e-62 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2512 K08150 - gmx:100783605 650.973