Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2507 ATGTATAAGAGAAAAAGCCTATGTTCTATGTTTAGACTTGCAATTTCAAGCTCCAAATTCACGCACTCAGCAACAAGCATCTGCAACAATGTTATGTCCAAATCACATTTTTCGTCCCAAGATTCTCTCACAACCCAATTGGAATCTTTGTTTCAGGGTTTTTCAGATGCTTCTGTGCTTAGACAAGTTAGACAAATTCATGCTCAGGTCATTGTTGGTGCCATGAGTGATATTATTACCCTGAGTTCAAGGATTTTGGGGATGTATGTTCTTTGTGGTGATATAAAGGATGCTGGAAACGTGTTTTTTAAGCTTGAATTGTGCTATGCTCTTCCTTGGAATTGGATGATTAGAGGGTTTTACATGTTGGGGTGGTTTGATTTTGCCTTGTTGTTTTTCTTCAAGATGTTGGGTAGCAAGGTTTCACCGGACAAATACACATTCCCTTATGTGATTAAAGCTTGTGGGGCTTTGAATAATGTGCCAATGTGTAAGGTGGTTCATAATGTGGTTGGGTGCATGGGGTTTCGTGTGGACTTGTTTGTTGGTAGTGCTCTGATCAAGTTGTATGCGGAAAGTGGTTATATTCATGATGCGAGGGATGTGTTTGATGAATTGCCTCTGAGAGACACCGTTCTGTGGAATGTCATGCTCAATGGTTATGTGAAAGGTGGAGATTTTGACAATGCAATGAAAACATTTTGTGAAATGAGGAACTCTTCTAGTAAACCTAATTTTGTAACGTTTACTTGTATTTTGTCGACGTGCGCTAATAGAGGGAAACTTTGCGTTGGTATTCAGCTTCATGGTCTTGTTATTAGTAGTGGGTTTGAGTTTGATTCCCAGGTAGCAAACACACTTGTAGCCATGTATTCAAAATGTGGGAATCTTTTTGACGCTCGCAAATTATTTAATACAATGCCACAGACTGATACGGTGACTTGGAACGTGCTGATTGCCGGATTTGTACAAAATGGATTTGCAGACGAGGCTGCACCTTTGTTTAATGCAATGATCTCTGCTGGTGTCAAACCAGATTCAGTCACTTTTGCAAGTTTCCTTCCTTCTATCCTTGAATCTGGGAGTCTCAAACGTTGTAAGGAAGTTCATTGTTACATAGTGCGACATAGGGTGCCTTTTGATGTCTATTTGAAGAGTGCTCTTATTGACATATACTGCAAGGGTGGAGATGTGGTGATGGCACGCAAGATTTTTGAGCAGAATACCTTGGTTGATATTGCTGTTTGCACGGCTATGATCTCAGGTTATGTACTTAATGGGCTGAATGTTGATGCTATACACATTTTTAGGTGGTTAGTTCAAGAGGGTATGGTGCCTAATAGCCTGACCATGGCTAGTGTTTTGCCAGCTTGTGCTGCTTTGGCTGCACTGAAATTAGGGAAGGAGTTGCATTGTGATATTCTGAAGAAACGACTGGAGAATATAGTTAATGTGGGATCTGCCATCACAGACATGTATGCAAAATCTGGAAGACTGGATCTTGCTTATCAATTTTTCAGAAGAATGTCTGAAAGAGATAGTGTATGTTGGAATTCAATGATTTCAAGCTTCTCGCAGAATGGGAAACCAGAAATGGCCATTGATGTTTTTCGTCAAATGGGAATGAGTGGAACCAAGTATGATTCTGTGAGCCTATCATCTGCTCTCTCAGCTGCGGCAAATTCACCAGCACTTTATTACGGGAAGGAGATACATGGTTATGTGGTAAGAAATGCATTTACTTTTGACACTTTCGTTGCAAGTGCACTGATAGACATGTATTCCAAATGTGGAAAACTAGCTTCGGCTCAGTGTGTGTTTGACCTGATGGATGGGAAGAATGAAGTTTCATGGAACAGCATCATTGCTGCCTATGGAAACCATGGTATCCTTAGAACATGTCTTAATCTATTCCATGAGATGTTGGAAGCTGGGGTTCGCCCTGATCATGTTACTTTTCTTGTTATAATATCTGCTTGTGGCCATGCGGGCCTAGTTGACGAAGGCATATACTACTTTCGTTGCATGACTGAGGAATATGGGATCTGTGCTACGATGGAGCACTATGCATGCATGGTAGATTTGTATGGTCGTGCTGGTCGTTTGCACGAAGCATTTGATACCATACAGAGCATGCCATTCACTCCAGACGCAGGTGTTTGGGGGACACTTCTTGGAGCTTGCCGGCTTCATGGCAATGTTGAGTTGGCTAAACTAGCTTCAAAACACCTTCTCGAATTAGACCCAAAAAACTCTGGATACTATGTATTGCTTTCAAATGTACATGCTGTCGCTGGTGAATGGGCAAGTGTTCTTAAGATACGAAGTTTAATGAAGGAAAAGAGAGTTCAGAAGATAACTGGATACAGCTGGATTGATGTCAATGGTGGCACCCATATGTTTTCTGCCGCTGATGGAGGTCACCCAGAATCTGTTGAGATCTATTTAATTCTGAAGAGTCTCCTTCTTGAGTTGAGAAAACAGGGTTATGCTCCTCAACCTTACCTTCCACTCCACCCACAAACCATGAGCGATAATTGA 2541 0.4144 MYKRKSLCSMFRLAISSSKFTHSATSICNNVMSKSHFSSQDSLTTQLESLFQGFSDASVLRQVRQIHAQVIVGAMSDIITLSSRILGMYVLCGDIKDAGNVFFKLELCYALPWNWMIRGFYMLGWFDFALLFFFKMLGSKVSPDKYTFPYVIKACGALNNVPMCKVVHNVVGCMGFRVDLFVGSALIKLYAESGYIHDARDVFDELPLRDTVLWNVMLNGYVKGGDFDNAMKTFCEMRNSSSKPNFVTFTCILSTCANRGKLCVGIQLHGLVISSGFEFDSQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNVLIAGFVQNGFADEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLKRCKEVHCYIVRHRVPFDVYLKSALIDIYCKGGDVVMARKIFEQNTLVDIAVCTAMISGYVLNGLNVDAIHIFRWLVQEGMVPNSLTMASVLPACAALAALKLGKELHCDILKKRLENIVNVGSAITDMYAKSGRLDLAYQFFRRMSERDSVCWNSMISSFSQNGKPEMAIDVFRQMGMSGTKYDSVSLSSALSAAANSPALYYGKEIHGYVVRNAFTFDTFVASALIDMYSKCGKLASAQCVFDLMDGKNEVSWNSIIAAYGNHGILRTCLNLFHEMLEAGVRPDHVTFLVIISACGHAGLVDEGIYYFRCMTEEYGICATMEHYACMVDLYGRAGRLHEAFDTIQSMPFTPDAGVWGTLLGACRLHGNVELAKLASKHLLELDPKNSGYYVLLSNVHAVAGEWASVLKIRSLMKEKRVQKITGYSWIDVNGGTHMFSAADGGHPESVEIYLILKSLLLELRKQGYAPQPYLPLHPQTMSDN* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2507 846 PANTHER - 531 841 - -
Apr1g2507 846 PANTHER - 430 540 - -
Apr1g2507 846 PANTHER - 31 430 - -
Apr1g2507 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Apr1g2507 846 TIGRFAM PPR: pentatricopeptide repeat domain 313 347 IPR002885 -
Apr1g2507 846 TIGRFAM PPR: pentatricopeptide repeat domain 616 649 IPR002885 -
Apr1g2507 846 TIGRFAM PPR: pentatricopeptide repeat domain 212 245 IPR002885 -
Apr1g2507 846 TIGRFAM PPR: pentatricopeptide repeat domain 515 547 IPR002885 -
Apr1g2507 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Apr1g2507 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Apr1g2507 846 Pfam E motif 731 793 IPR046848 -
Apr1g2507 846 Pfam PPR repeat 515 544 IPR002885 -
Apr1g2507 846 Pfam PPR repeat 689 712 IPR002885 -
Apr1g2507 846 Pfam PPR repeat 416 437 IPR002885 -
Apr1g2507 846 Pfam PPR repeat 386 406 IPR002885 -
Apr1g2507 846 Pfam PPR repeat 113 139 IPR002885 -
Apr1g2507 846 Pfam PPR repeat 491 512 IPR002885 -
Apr1g2507 846 Pfam PPR repeat 285 308 IPR002885 -
Apr1g2507 846 Pfam PPR repeat 184 206 IPR002885 -
Apr1g2507 846 SUPERFAMILY TPR-like 492 774 IPR011990 GO:0005515
Apr1g2507 846 Gene3D Tetratricopeptide repeat domain 586 805 IPR011990 GO:0005515
Apr1g2507 846 Gene3D Tetratricopeptide repeat domain 430 578 IPR011990 GO:0005515
Apr1g2507 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 614 648 IPR002885 -
Apr1g2507 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Apr1g2507 846 PANTHER - 31 430 - -
Apr1g2507 846 PANTHER - 430 540 - -
Apr1g2507 846 PANTHER - 531 841 - -
Apr1g2507 846 Gene3D Tetratricopeptide repeat domain 263 373 IPR011990 GO:0005515
Apr1g2507 846 Gene3D Tetratricopeptide repeat domain 160 262 IPR011990 GO:0005515
Apr1g2507 846 Gene3D Tetratricopeptide repeat domain 13 159 IPR011990 GO:0005515
Apr1g2507 846 Pfam PPR repeat family 210 257 IPR002885 -
Apr1g2507 846 Pfam PPR repeat family 311 352 IPR002885 -
Apr1g2507 846 Pfam PPR repeat family 613 660 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2507 Apr-Chr1 34677845 34681603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2507 144 839 Glycoside Hydrolase AT3G49170 35.269 1.31e-140 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2507 - - gmx:100812437 1402.5