Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2506 ATGGATCACCATGAGGATGAAAGTAACAGCAAACAAGATGACGAGGAAGCTGTTGCTCGCCTTGAAGAAATAAAAAAATCTATTGAGGCAAAGATGGCTTTGCGTCAAAGCAATTTGAATCCTGAAAGACCTGACTCAGGATTTTTGAGGACGCTGGATTCCAGCATTAAGCGCAATACTGCTGTGATTAAGAAGCTGAAGCAGATTAATGAAGAGCAGCGCGAAGCATTGATGGACGAGTTGCGAAGTGTCAACTTGAGCAAATTTGTCAGTGAAGCTGTGACAGCTATATGTGATGCCAAGCTTAGAAGTTCTGATATACAAGCAGCAGTTCAGATCTGTTCTTTGCTACATCAAAGGTACAAGGACTTTGCACCAAGCCTGATACAAGGGCTTCTCAAAGTCTTCTCTCCTGGAAAACCTGCCGATGAATCAGATGCAGACAGAAACTTGAAGGCAATGAAGAAGCGCAGCTCTCTGAAGCTTCTATTGGAGCTTTTTTTTGTTGGAGTTATTGAAGATGGTCACATTTTTATCAATATCGTAAAAGAACTTACCAGTGTGGAACAGCTAAAAGATCGGGATGCTACACAAACAAGTTTGACCCTTCTTTCTAGTTTTGCTCGGCAGGGAAGAATTTTTCTAGGACTTTCTGTTACTGGGCCCGACATTCATGAAGAGTTTTTTAAAGGCCTAAACATCACAGCAGATCAGAAGAAAGTTTTCCGGAAAGCATGTTATTCGTTTTATGATGCTGCAGCTGAACTACTTCAGTCTGAGCATTCTTCACTTCGACTAATGGAGCATGAAAATTCTAAGATTTTGAATGCAAAAGGAGAGCTCAGTGATGAAAATATCGCTTCTTATGAAAAGCTTCGTAAATCCTATGACCACTTGTACCGTAACGTATCATCATTAGCAGAAGCACTTGATATGCAGCCTCCTGTAATGCCAGAGGATGGCCACACTACAAGGGTTACCAGTGGTGAGGAGGCTATTACTTCAGCTTCTGGTAAAGATTCTTCTGTTACTGAACCCATTTGGGATGATGAAGATACGAGGACTTTCTATGAATGTTTACCTGATCTTAGAGCTTTTGTTCCTGCTGTGCTTTTGGGAGAAATGGAGCCAAAAAGCAGTGAGCAATCTGTGAAGAGTCAAGACCAACCAACTGAAACATTGCCCGAGTCAGACAAAGGTCAACTGACTACTCATGAAAGTGGAGAGGTTTCCACCGAGTCTAATACTGTGCCAGAGGGAGAAAGCGTAGAAAGAGTGAAGGATAAGGAAGACAAAGACAAGTCTAAAGACTTGGACAGAGAGAAGGAAAAAGAAAAAGATAATGACAAAAAGGCAGAAAATGAAAAAGACAAACTCAGAAGTCTTGAAGGGACAAATTTGGATGCTCTACTGCAGAGGCTTCCGGGTTGTGTGAGCCGGGACCTTATAGATCAATTAACTGTAGAGTTCTGTTATCTAAATTCAAAATCAAATCGGAAAAAGCTTGTGAGGGCTTTGTTCAATGTACCGAGGACATCTCTGGAACTGCTACCATATTACTCGCGCATGGTTGCCACACTGTCAACTTGTATGAAGGATGTGTCCTCCATTCTCTTGCAGATGTTGGAGGAGGAATTCAGCTTCTTAATTAATAAAAAGGATCAGATGAACATTGAGACAAAGATAAGAAACATCAGGTTCATAGGTGAACTTTGCAAGTTCAAAATTGCACCTGCTAGCCTAGTCTTCAGTTGTTTGAAGGCCTGTCTAGATGATTTTACTCATCACAACATTGATGTAGCTTGTAATCTTCTTGAAACATGTGGCCGTTTCCTGTATCGGTCTCCAGAAACTACTATACGAATGGCTAACATGTTGGAGATACTGATGCGCTTGAAAAATGTCAAAAACTTGGATCCAAGACATAGTACTTTAGTGGAGAATGCATACTACCTTTGCAAACCACCAGAACGATCTGCACGAGTTGCTAAAGTTCGTCCTCCATTGCATCAGTATATCAGAAAATTACTTTTCTCAGATCTTGATAAGTCTACCATTGAGCATGTGCTGAGGCAACTACGTAAATTACCATGGAGCGAATGTGAACCATATGTGCTGAAATGCTTCATGAAGGTCCACAAAGGCAAATATGGTCAGATCCACCTGATTGCATCTCTTGCTGCTGGGTTAAGTCGCTATCATGATGAGTTTGCTGTCGCCATTGTTGATGAGGTTTTGGAGGAGATTAGAGTTGGGCTGGAATTAAATGACTATGGTATGCAGCAAAGACGCATTGCCTACATGCGATTCTTAGGGGAGCTTTACAACTATGAGCATGTCGACTCGTCTGTTATTTTTGAGACACTATATCACATTCTCATCTATGGCCATGGGACCCCAGAGCAAGATGTACTCGATCCACCTGAAGATTGTTTTCGTATAAGGTTGATCATTACTCTGCTTGAAACTTGTGGGCATTACTTTGATCGTGGCTCTTCCAAGAGGAAACTTGATCGATTCCTAATACACTTCCAGAGGTATATTTTAAGCAAAGGTGCAATGCCTCTGGACATGGAATTTGACTTGCAGGATCTGTTTGCTGACTTGCGTCCCAATATGGTTCGTTACACATCTATTGAGGAAGTGAATGCAGCTCTAGCAGAACTTGAGGAACATGATCGTACAGTTTCTGCTGATAAGGCCACTAGTGAAAAACATTCTGACACTGAAAAGCCTTCAAGTAGGATCACTTCTACCACAGTGGTTGGCAATGGACAGAACATTGATAATGGTGCAGAGGAAAATGGAGTGCAAGATGATGTTAATGAGAGTGAGACTGATTCAGGGAGTGACACAATTGATGTGGAGGGACATGATGATGAAGAGTTGGATGAAGAAAATCATGATGATGGGTGTGAGACTGAGGAGGATGACGATGAAGATGATGATGGGCCTGGGCCTGCTTCTGATGAGGAGGATGAAGTTCATGTGAGACAAAAAGTGACAGAGGTGGACCCTCTGGAAGAAGCCAATTTTGATCAGGAGCTAAAGGCTGTAGTACAGGAGAGTATGGAACAGCGAAGGCAGGAGCTCCGAGGCCGTCCTACGTTGAACATGATGATTCCAATGAATGTATTTGAGGGATCTGCCAAGGATCACCATGGGAGGGGAGTTGGTGGGGAAAGTGGTGATGAAGCACTGGATGAGGATAATGGTGGAAACAGAGAGGTTCAGGTGAGAGTTCTTGTGAAGCGTGGGAACAAGCAACAAACAAAGCAGATGTTCATCCCACGGAATTCCTCACTGGTGCAGAGTACAAAACAGAAAGAAGCAGCAGAGCTTCAAGAGAAAGAAGATATTAAGAGGCTTGTCTTGGAGTATAATGATAGAGAAGAAGAGGAGCTTAATGGATTAGGGACCCAGCCAACAAACTGGATGCAGAGTGGAGGTAACAAGGTTAGTGGCCGTGGCAACATTCTTGAAGGAACTGGCGGCAGGGGTGGGGGATCACGACATCGACATCATAATTATTCTAGCAGTGGAATCTACTATAGCAGAAGAAAGTGA 3567 0.4272 MDHHEDESNSKQDDEEAVARLEEIKKSIEAKMALRQSNLNPERPDSGFLRTLDSSIKRNTAVIKKLKQINEEQREALMDELRSVNLSKFVSEAVTAICDAKLRSSDIQAAVQICSLLHQRYKDFAPSLIQGLLKVFSPGKPADESDADRNLKAMKKRSSLKLLLELFFVGVIEDGHIFINIVKELTSVEQLKDRDATQTSLTLLSSFARQGRIFLGLSVTGPDIHEEFFKGLNITADQKKVFRKACYSFYDAAAELLQSEHSSLRLMEHENSKILNAKGELSDENIASYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEEAITSASGKDSSVTEPIWDDEDTRTFYECLPDLRAFVPAVLLGEMEPKSSEQSVKSQDQPTETLPESDKGQLTTHESGEVSTESNTVPEGESVERVKDKEDKDKSKDLDREKEKEKDNDKKAENEKDKLRSLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSILLQMLEEEFSFLINKKDQMNIETKIRNIRFIGELCKFKIAPASLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWSECEPYVLKCFMKVHKGKYGQIHLIASLAAGLSRYHDEFAVAIVDEVLEEIRVGLELNDYGMQQRRIAYMRFLGELYNYEHVDSSVIFETLYHILIYGHGTPEQDVLDPPEDCFRIRLIITLLETCGHYFDRGSSKRKLDRFLIHFQRYILSKGAMPLDMEFDLQDLFADLRPNMVRYTSIEEVNAALAELEEHDRTVSADKATSEKHSDTEKPSSRITSTTVVGNGQNIDNGAEENGVQDDVNESETDSGSDTIDVEGHDDEELDEENHDDGCETEEDDDEDDDGPGPASDEEDEVHVRQKVTEVDPLEEANFDQELKAVVQESMEQRRQELRGRPTLNMMIPMNVFEGSAKDHHGRGVGGESGDEALDEDNGGNREVQVRVLVKRGNKQQTKQMFIPRNSSLVQSTKQKEAAELQEKEDIKRLVLEYNDREEEELNGLGTQPTNWMQSGGNKVSGRGNILEGTGGRGGGSRHRHHNYSSSGIYYSRRK* 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2506 1188 MobiDBLite consensus disorder prediction 1133 1188 - -
Apr1g2506 1188 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 3 1187 IPR039762 GO:0000184
Apr1g2506 1188 SUPERFAMILY ARM repeat 465 659 IPR016024 -
Apr1g2506 1188 SUPERFAMILY ARM repeat 64 185 IPR016024 -
Apr1g2506 1188 MobiDBLite consensus disorder prediction 327 342 - -
Apr1g2506 1188 MobiDBLite consensus disorder prediction 376 458 - -
Apr1g2506 1188 Gene3D - 434 664 - -
Apr1g2506 1188 MobiDBLite consensus disorder prediction 1174 1188 - -
Apr1g2506 1188 Coils Coil 11 31 - -
Apr1g2506 1188 PANTHER - 3 1187 - -
Apr1g2506 1188 SUPERFAMILY ARM repeat 666 891 IPR016024 -
Apr1g2506 1188 Gene3D - 666 896 - -
Apr1g2506 1188 Pfam MIF4G domain 471 655 IPR003890 GO:0003723|GO:0005515
Apr1g2506 1188 Pfam MIF4G domain 673 867 IPR003890 GO:0003723|GO:0005515
Apr1g2506 1188 Coils Coil 435 462 - -
Apr1g2506 1188 MobiDBLite consensus disorder prediction 893 912 - -
Apr1g2506 1188 MobiDBLite consensus disorder prediction 313 346 - -
Apr1g2506 1188 MobiDBLite consensus disorder prediction 1049 1075 - -
Apr1g2506 1188 SMART if4_15 468 656 IPR003890 GO:0003723|GO:0005515
Apr1g2506 1188 SMART if4_15 671 872 IPR003890 GO:0003723|GO:0005515
Apr1g2506 1188 SMART if4_15 56 278 IPR003890 GO:0003723|GO:0005515
Apr1g2506 1188 Pfam Up-frameshift suppressor 2 990 1126 IPR007193 -
Apr1g2506 1188 MobiDBLite consensus disorder prediction 913 933 - -
Apr1g2506 1188 MobiDBLite consensus disorder prediction 1049 1076 - -
Apr1g2506 1188 MobiDBLite consensus disorder prediction 893 1014 - -
Apr1g2506 1188 Gene3D - 8 318 - -
Apr1g2506 1188 MobiDBLite consensus disorder prediction 379 419 - -
Apr1g2506 1188 MobiDBLite consensus disorder prediction 420 458 - -
Apr1g2506 1188 MobiDBLite consensus disorder prediction 936 989 - -
Apr1g2506 1188 Coils Coil 539 559 - -
Apr1g2506 1188 MobiDBLite consensus disorder prediction 990 1012 - -
Apr1g2506 1188 MobiDBLite consensus disorder prediction 1137 1154 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2506 K14327 - gmx:100786092 2055.8