Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2500 ATGAACTTCAGGTTCCAGAACCTTCTGGGGGCTCCCTACAGGGGGGGCAACGCCGTCATTTCTAACAACACCCTGCTACTCTCACCCATCGGTAACCGCGTCGCCGTCACCGACCTCCTCAAGTCCGAAACCACCACCCTCCCATTCCAATCCTCTTCCAACGTCTCCCGCATCGCCGTCTCCCCCGACGCCACCTTCCTCCTCGCCGTCGATGACCGCAACCGTTGCCTCTTCATCAACCTCCGCCGTCGCACCCTTCTCCACCGCATAACCTTCAAGCACCGCGTCGCTGCCGTCAAGTTCAGCCCCGACGGTGCCCTCATCGCCGTCGCTGCCGGCAAGCTCGTCCAGATCTGGCGTTCACCGGCGTTTCGCAAGGAGTACTTTCCCTTCGAGTTGATTCGGACCTTCACCGATTTCACCGCCAAAGTCACCTCATTGGACTGGAGCCCTGACTCAAAGTACTTGATCGTCGGGTCCAAGGACTTAACCGCGAGAATCTTTAAGGTTTGTAAGGCTTATACGATCACTAGGGATTGCTATTTGTTTAGCTGGGGGTTTACTCGTGATGAAAATGGTGATGGTGATGATGATGGATTGGAGCCACCATCACCGGGGACGCCGGACAGGGACGTGGAAGGGAATTTGGAGATTAGTGAGAGTGGGAATGCGAAGAAGAGAAAGAATTGTGATGTTGAGGATGATGGAGAGGATTACTTGAGCAGAGGGAAGTGGGAGTTACTGAGGAAGGACAGTTTTGTGCAGGCGCCGGCGAAGGTAACAGCATGTGATTATCATAGAGGGATGGACATGGTGGTTGTTGGATTTTCTAGTGGTGTGTTTGGGTTGTATCAGATGCCAGATTTTGTGTGCATTCATTTGTTGTCTATATCAAGGGAGAAGATCTCCACTGCGGTGTTTAATGAGCTTGGGAATTGGTTGACCTTTGGCTGCGCAAAATTGGGCCAGCTGCTTGTGTGGGAGTGGCGGTCTGAGAGCTACATTTTGAAGCAGCAGGGACACTACTTTGATGTGAATTGCGTTGCATATTCATCAGACTCGCAGCTCCTTGCTACTGGAGCAGATGATAATAAAGTGAAGGTGTGGACTCTTTCCTCAGGCTTTTGTTTTGTTACATTTTCTGAGCACAGCAATGCTGTCACGGCTCTACATTTTATGGCAAGTAACAATTGCCTGCTTAGTGCATCACTTGATGGGACCATTCGTGCATGGGATTTGTTACGTTACCGGAATTTTAGGACATTCACAACCCCTTCTTCTAGGCAGTTTGTTTCCCTGACAGCTGATCAAAGTGGTGAAGTGATTTGTGCAGGGACTTCAGATTCCTTTGAGATTTTTGTTTGGTCGATGAGAACGGGCCGCTTGTTGGACGTGCTTAGTGGTCACGGAGCTCCTGTTCATGGGCTGATATTTTCTCCCACAAATGCTGTCTTGGCTTCATCATCATATGACAAAACTGTTCGGTTGTGGGATGTCTTTGATGGGAAAGGAGCAGTTGAAACATTTCCTCACACACATGATGTTCTTACAGTAGTTTATCGTCCAGATGGAAAGCAGTTAGCTTGCAGTACATTAGATGGGCAAATTCATTTTTGGGATCCAATAGATGGTTTGCTGATGTACACCATAGAAGGTTCTAGAGATATTGCTGGTGGGCGTCTTATGACTGACCGTAGATCAGCTGCTAACTCAACTTCGGGGAAGTACTTCACAACCTTGTGTTATTCAGCTGATGGAAGCTACATATTGGCTGGGGGGAGTAGCAGATACATCTGTATGTATGATGTTGGAGATCAGGTATTGCTGCGACGTTTCCAGATAACTCACAATCTTTCATTAGATGGAGTGCTTGACATTTTAAACTCAAAGAATATGACAGAAGCTGGTCCACTAGATTTGATTGATGATGACAACAGTGACATTGAAGAAGGTGTTGACAAACAAACCCGAGGAAAAATAGGTCTAGACTTACCAGGATCTATGCCTAATCGAGGAAGACCTATTATTCAAACAAAATGCCTGAGAATTGCACCTACAGGTCGGAGTTTTGTTGCAGCAACAACTGAGGGAGTTTTGGTTTATTCTGTTGATGAATCATTCATATTTGATCCAACTGATCTAGACATAAATGTCACACCAGAGGCTGTTGATGAAGCTCTTAGTGAAAATCAACCAAGTAGAGCTTTGATCCTTAGCCTTCGCCTAAATGAAGATTCTTTTATTAAAAAATGTATTTTCGCGGTTTCTCCGACAGATATTCCGGCAGTTGCCACATCAATCCCTTACAAATATATCCAGCGATTAGTTGATGCACTTGCAGATCTTCTAGAAAATTGCCCGCATTTGGAATTTATACTTAGATGGTGTCAGGAGCTCTGCAAAGCCCATGGGAATTCTATTCAGCGGAACTCAAGAAATCTGCTCCCATCACTAAAATCTTTGCAGAAAGCAATCACTAGAATACATCAAGATCTAGCTGATACATGCTCCTCCAATGAATATATGCTGCGATATTTATGTTCTTCTGGTGCCAAGAAAGACTGTTAA 2568 0.4618 MNFRFQNLLGAPYRGGNAVISNNTLLLSPIGNRVAVTDLLKSETTTLPFQSSSNVSRIAVSPDATFLLAVDDRNRCLFINLRRRTLLHRITFKHRVAAVKFSPDGALIAVAAGKLVQIWRSPAFRKEYFPFELIRTFTDFTAKVTSLDWSPDSKYLIVGSKDLTARIFKVCKAYTITRDCYLFSWGFTRDENGDGDDDGLEPPSPGTPDRDVEGNLEISESGNAKKRKNCDVEDDGEDYLSRGKWELLRKDSFVQAPAKVTACDYHRGMDMVVVGFSSGVFGLYQMPDFVCIHLLSISREKISTAVFNELGNWLTFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCVAYSSDSQLLATGADDNKVKVWTLSSGFCFVTFSEHSNAVTALHFMASNNCLLSASLDGTIRAWDLLRYRNFRTFTTPSSRQFVSLTADQSGEVICAGTSDSFEIFVWSMRTGRLLDVLSGHGAPVHGLIFSPTNAVLASSSYDKTVRLWDVFDGKGAVETFPHTHDVLTVVYRPDGKQLACSTLDGQIHFWDPIDGLLMYTIEGSRDIAGGRLMTDRRSAANSTSGKYFTTLCYSADGSYILAGGSSRYICMYDVGDQVLLRRFQITHNLSLDGVLDILNSKNMTEAGPLDLIDDDNSDIEEGVDKQTRGKIGLDLPGSMPNRGRPIIQTKCLRIAPTGRSFVAATTEGVLVYSVDESFIFDPTDLDINVTPEAVDEALSENQPSRALILSLRLNEDSFIKKCIFAVSPTDIPAVATSIPYKYIQRLVDALADLLENCPHLEFILRWCQELCKAHGNSIQRNSRNLLPSLKSLQKAITRIHQDLADTCSSNEYMLRYLCSSGAKKDC* 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2500 855 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 338 374 - -
Apr1g2500 855 Pfam WD domain, G-beta repeat 133 168 IPR001680 GO:0005515
Apr1g2500 855 Pfam WD domain, G-beta repeat 461 498 IPR001680 GO:0005515
Apr1g2500 855 Pfam WD domain, G-beta repeat 339 369 IPR001680 GO:0005515
Apr1g2500 855 Pfam WD domain, G-beta repeat 376 412 IPR001680 GO:0005515
Apr1g2500 855 Pfam WD domain, G-beta repeat 512 540 IPR001680 GO:0005515
Apr1g2500 855 ProSiteProfiles Trp-Asp (WD) repeats profile. 380 421 IPR001680 GO:0005515
Apr1g2500 855 SUPERFAMILY DPP6 N-terminal domain-like 8 170 - -
Apr1g2500 855 ProSiteProfiles Trp-Asp (WD) repeats profile. 338 379 IPR001680 GO:0005515
Apr1g2500 855 SUPERFAMILY WD40 repeat-like 128 543 IPR036322 GO:0005515
Apr1g2500 855 Gene3D - 450 635 IPR015943 GO:0005515
Apr1g2500 855 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 380 413 - -
Apr1g2500 855 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 466 499 - -
Apr1g2500 855 ProSitePatterns Trp-Asp (WD) repeats signature. 485 499 IPR019775 -
Apr1g2500 855 ProSiteProfiles Trp-Asp (WD) repeats profile. 508 540 IPR001680 GO:0005515
Apr1g2500 855 ProSiteProfiles Trp-Asp (WD) repeats profile. 137 170 IPR001680 GO:0005515
Apr1g2500 855 ProSitePatterns Trp-Asp (WD) repeats signature. 399 413 IPR019775 -
Apr1g2500 855 CDD WD40 291 587 - -
Apr1g2500 855 Pfam Dip2/Utp12 Family 743 848 IPR007148 -
Apr1g2500 855 MobiDBLite consensus disorder prediction 194 235 - -
Apr1g2500 855 Gene3D - 21 194 IPR015943 GO:0005515
Apr1g2500 855 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 508 540 - -
Apr1g2500 855 PANTHER WD40 REPEAT PROTEIN 1 850 IPR027145 -
Apr1g2500 855 SMART WD40_4 502 540 IPR001680 GO:0005515
Apr1g2500 855 SMART WD40_4 83 120 IPR001680 GO:0005515
Apr1g2500 855 SMART WD40_4 40 80 IPR001680 GO:0005515
Apr1g2500 855 SMART WD40_4 459 498 IPR001680 GO:0005515
Apr1g2500 855 SMART WD40_4 331 370 IPR001680 GO:0005515
Apr1g2500 855 SMART WD40_4 563 602 IPR001680 GO:0005515
Apr1g2500 855 SMART WD40_4 415 456 IPR001680 GO:0005515
Apr1g2500 855 SMART WD40_4 130 169 IPR001680 GO:0005515
Apr1g2500 855 SMART WD40_4 288 328 IPR001680 GO:0005515
Apr1g2500 855 SMART WD40_4 373 412 IPR001680 GO:0005515
Apr1g2500 855 Gene3D - 246 449 IPR015943 GO:0005515
Apr1g2500 855 PRINTS G protein beta WD-40 repeat signature 357 371 IPR020472 -
Apr1g2500 855 PRINTS G protein beta WD-40 repeat signature 399 413 IPR020472 -
Apr1g2500 855 PRINTS G protein beta WD-40 repeat signature 485 499 IPR020472 -
Apr1g2500 855 MobiDBLite consensus disorder prediction 213 235 - -
Apr1g2500 855 SUPERFAMILY WD40 repeat-like 509 702 IPR036322 GO:0005515
Apr1g2500 855 ProSiteProfiles Trp-Asp (WD) repeats profile. 466 507 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2500 437 613 Miscellaneous Gene Families AT5G08390 20.339 1.92e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2500 K14558 - gmx:100526905 1538.86