Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2456 ATGGTTGCTACCATGTCACCTTCAACTAATTATCCTTCTAAATCCAATACCACCATTAACAATCTCTTCAACGATTCCCTCACCGAAATCTTTTGTAGACTCTCTTGCAAATCCCTCTTAACATGCAAAAGTGTTTCACAACATTGGCTTGCGCTTATTTCTGATCCTAATTTCCATTCCTTATACCTCACTCACCAAAGCACCCTTTTCCAAGACATGCAGGCCCAAGGAGAGGACCCCGATCAACCCAGTTTCATCCTAAAGCCATACAATGCACTCGTGATAGCACCAAAGTTACCCTCTTTACAACTTGGGCATATCGAAAAACAATTGTCGTTGAGTTTTCTAGGCTCAGATTTCGAGCCCACTAATGTCGTACCACAATTAAGGTCTATCTTGAAGTTTGTTTTTGGTTGTTCCAATGGTTTACTTTTATGTGGAAACCCACGTCCATGTCACAAATGCATATACCACATTTGCAACCCGCTTACTAGGGATATGTTGGAACTCCCTAGTGCTTTATCTCTTTGTGATCATGCTGGGGTTCTTGTGGGTTTCACATGCGACCCTTATTATTGTCTTGAAAAAGAGGTTGTCTCCGTTGTTTCTTCTTCTCAGCGCAAGTTTAGAGTGGTGCGCATTCCTGCTTTTAGTGACATGAGATTTTCCTTTAATGTTGAGGTTTTCTATTCCGAGACAGGGAAATGGAACCGGTTTGTTGTGTCTTGCCCAAAAGGGTTCGCGTGTGGGTTTTTTCTCATGGCATCAAGTGTTGAGCATGATGGGAAGCTGTACTTTATGGGTGGAGGAAGGGTTCTTGTGTATGATCCTTATAATGATGAACAAGTGGCCTCTATCATTGAACTTCCTAGTGGATTTGGTGAACCGTATAGAGGGTGCCTTGGAGTTTCTTGTGGACGGTTGCAGTTATCCGAGTTCCCAATTTTACCACCTATTGCCACTGCCTATGTGGGTGCTTACAGTGGCAGAGTTTGGGAGTTGCAATTTTGTGATTATGGGAAAGGAGGAGAAACGACATGGAAAATGGTGCATGAATTTGATCTCCCTGACATTGTTGGACCAATCTTTGAAGAGTTGAAAGTTGTAGAGGGTGAACATGTAAGGGGATGCAGTAGGATTCTAGCTTTCCATCCGTATGCTAGGGACACTGTATTTTTTATGTTAGGTGATCACATCCTTTATTGTAATTTGTTAACTGGTAGGTTCAAGGTAACCAAATATAGTGGTCTTTCCTTAGTTTTTTATCCAGTAATCCCATTTGTGCTTCCATGGTGGCCAACTCCAATTCCTCCATTGCCTTCATAG 1326 0.4223 MVATMSPSTNYPSKSNTTINNLFNDSLTEIFCRLSCKSLLTCKSVSQHWLALISDPNFHSLYLTHQSTLFQDMQAQGEDPDQPSFILKPYNALVIAPKLPSLQLGHIEKQLSLSFLGSDFEPTNVVPQLRSILKFVFGCSNGLLLCGNPRPCHKCIYHICNPLTRDMLELPSALSLCDHAGVLVGFTCDPYYCLEKEVVSVVSSSQRKFRVVRIPAFSDMRFSFNVEVFYSETGKWNRFVVSCPKGFACGFFLMASSVEHDGKLYFMGGGRVLVYDPYNDEQVASIIELPSGFGEPYRGCLGVSCGRLQLSEFPILPPIATAYVGAYSGRVWELQFCDYGKGGETTWKMVHEFDLPDIVGPIFEELKVVEGEHVRGCSRILAFHPYARDTVFFMLGDHILYCNLLTGRFKVTKYSGLSLVFYPVIPFVLPWWPTPIPPLPS* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2456 441 Pfam F-box domain 20 59 IPR001810 GO:0005515
Apr1g2456 441 Gene3D - 4 79 - -
Apr1g2456 441 SMART fbox_2 22 62 IPR001810 GO:0005515
Apr1g2456 441 PANTHER OS08G0529300 PROTEIN 16 440 - -
Apr1g2456 441 SUPERFAMILY Galactose oxidase, central domain 223 290 IPR011043 -
Apr1g2456 441 SUPERFAMILY F-box domain 16 89 IPR036047 GO:0005515
Apr1g2456 441 PANTHER F-BOX PROTEIN INTERACTION DOMAIN PROTEIN-RELATED 16 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2456 Apr-Chr1 34186217 34187542 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2456 - - gmx:102666623 643.654