Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2448 ATGGCAAGGCGAAAATTTCCTCTTGGTTGCTATGTTGTTTGCATAACATTAATTCAGTTCATTGCTTCAATTAGTTTCATTACATCCCAGAGTCTCATAAACGAGCCTAGTACTAGTACTACCACCATCACCACAGCCTTTTTCATCTTCGGTGACTCCACTGTAGATTCTGGCAACAACAACTACATAAATACTATTCTTGAGAACAGAGCAGATTACATACCATATGGACAAAATGGTTATTTTGAACAACCCACGGGACGATTCTCCGACGGTCGTGTCATTGTAGATTTTATAGCTGAATATGCTAAGCTGCCACTGATTCCTCCCTTTTTACAACCATTGGCTGATTTTAGTAGCGGTGTCAACTTTGCTTCTGGTGGGGCCGGTGTCCTTTCTGAAACCAATCAGGGACTGGTGATCGATCTTCAAACACAATTAAGGCACTTTGAAGAAGTGAGAAAATCACTAGCAGAAAATCTTGGAGAGGAGAAGGCAAAGGAGTTGATCTCAAAAGCAGTTTATTTCATTAGCATAGGAAGCAACGATTACATGGGTGGTTATCTAGGTAACCAAAAAATGCAAGAAAGATACAATCCTGAACAATATGTTGGGATGGTCATTGGAAACTTGACACAGGCAATTCAAACTCTGTATGAGAATGGGGCTAGAAAGTTTGGGTTTCTAAGTTTGTCTCCCTTGGGTTGCTTGCCAGCTCTTAGAGCTCTAAACCCTGAAGCCGACAAAGGTGGTTGTTTTGAAGCAGCTTCCGATCTTGCTCTAGCACATAATAATGCTTTAAGCAATGTTCTCACGGGCATAGAGCACATCCTTAAAGGGTTCATGTACTCTAACTCTAATTTCTATTATTGGCTTCAAGATAGATTAAATAACCCCACAAGTTATGGTTTTAAGGATGGAATTAATGCTTGCTGTGGTAGTGGACCATATGGAGGCATCTTCACCTGTGGGGACTCAAAGAAAGTTACAGAGTACAGCGTATGTAACAACATTGGTGATTATGTATGGTGGGATTCCTTCCACCCAACAGAGAAGATCCATGAGCAATTCGCTATGGCTTTATGGAATGGACCACCTTCCTCAGTAGGACCATATAATTTGGAGAAACTCTTCAACAATGAGATCAAAATCACTATTGCTGATGTAATTGATGCTCCTGAAACTGATTAA 1191 0.4064 MARRKFPLGCYVVCITLIQFIASISFITSQSLINEPSTSTTTITTAFFIFGDSTVDSGNNNYINTILENRADYIPYGQNGYFEQPTGRFSDGRVIVDFIAEYAKLPLIPPFLQPLADFSSGVNFASGGAGVLSETNQGLVIDLQTQLRHFEEVRKSLAENLGEEKAKELISKAVYFISIGSNDYMGGYLGNQKMQERYNPEQYVGMVIGNLTQAIQTLYENGARKFGFLSLSPLGCLPALRALNPEADKGGCFEAASDLALAHNNALSNVLTGIEHILKGFMYSNSNFYYWLQDRLNNPTSYGFKDGINACCGSGPYGGIFTCGDSKKVTEYSVCNNIGDYVWWDSFHPTEKIHEQFAMALWNGPPSSVGPYNLEKLFNNEIKITIADVIDAPETD* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2448 396 CDD SGNH_plant_lipase_like 51 365 IPR035669 -
Apr1g2448 396 Gene3D SGNH hydrolase 36 365 IPR036514 -
Apr1g2448 396 SUPERFAMILY SGNH hydrolase 47 363 - -
Apr1g2448 396 Pfam GDSL-like Lipase/Acylhydrolase 48 360 IPR001087 GO:0016788
Apr1g2448 396 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 11 385 - -
Apr1g2448 396 PANTHER - 11 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2448 Apr-Chr1 34132402 34134552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2448 46 380 Acyl Lipid Metabolism Gene Families AT4G10950 32.456 4.00e-61 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2448 - - gmx:100801228 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2448 1 34132402 34134552 Apr1g2448 1 34132402 34134552 ECH