Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2442 ATGTCGTCGGCGTCGTCGGAGAGTGTAGCCGCCGTGGAGGATCCGGTGGTGACGGCGCGTAATGCAAGGAAGATGAGAGTGAAGCTTGAACGGACAAGGTCGAGCGCGCAGAGAGCGTTGAAAGGTTTGAGATTCATAAGCAAGTCCGGTGAAGCCAGTGACGAGTTGTGGAGAAAGGTGGAAGAAAGGTTCAGTTTTTTGGCAAAGGATGGGTTGCTCGCTAGAGAAGACTTTGGTGAATGCATTGGGATGGAGGATTCCAAGGAATTTGCTGTTTGTATTTTTGATGCATTAGCTCGAAGGAAGGAAAGCAAAGTGAGTAAAATTACGAAAGAAGAGTTGCATCAATTCTGGTTGCAAATTTCGGACCAGAGCTTTGACGCCCGGCTTCAGATTTTCTTTGACATGGCAGACAGTAACGAAGACGGAAGAATTACAAGGGCGGAAGTACAAGAGCTCATAATGCTCAGTGCTTCTGCAAACAAGCTATCGAAGCTTAAAGAACAAGCTGAAGGATACGCTGCGTTAATAATGGAAGAATTAGATCCAGAAAACCTGGGTTATATAGAGCTGTGGCAGCTAGAAATGTTGTTGCTACAAAAGGATAGTTACATGAACTACAGCAGACAACTCAGCAGCGCAAGTGTAGGCTGGAGTCAAAATATGAGCGGTTTGAGGCGCAGAGATGAGATCCAAAGATTCCTGAGGACACTCCAATGTCTTGCATTAGAATATTGGAGAAGGGGCTGGATTTTGTTACTGTGGTTGGTTACCATTGGTTGCCTATTTGCCTGGAAATTTTACCAGTATAAAAACAAATCATCTTTCCAAGTCATGAGCTACTGCATACCAGTAGCCAAAGGTGCTGCAGAGACCCTGAAGCTCAACATGGCTCTAATTCTCTTGCCAGTTTGTCGAAACACATTGACATGGCTTCGTTCTACCAGAGCCAGGAAATTTGTCCCTTTTGATGACAATATTAATTTCCACAAGATGATTGCGTTTGCCATAGCTGTTGGAGTCGCGGTTCATGCTGGTAATCATTTGGCATGTGATTTTCCCCTCCTCGTAAATTCATCTCCAGAAAAATTTTCACTAATATCTTCAGATTTCAATAACAAAAAACCCACATATAAAACACTTCTGACCGGTGTAGAAGGCGTAACTGGAATCTTAATGGTTACTTTGATGGCAATCTCTTTCACTCTGGCAACTCACCACTTCCGGAAAAGTGCGGTCAAGCTTCCTCCACCATTTAACAGATTGACCGGCTTTAACGCATTCTGGTACTCACACCACCTTCTTGGCCTCGTCTATGTTCTGCTTCTCATCCATGGATCATTCTTGTATTTGACTCATGGGTGGTACCAAAAAACGACATGGATGTATATCTCTGTTCCACTGCTGCTTTACGTTGCAGAGCGTACTCTACGCACTCGTAGATCAGCACATTATACAGTAAAAATTCAGAAGGTGTCGGTGCTACCAGGAAATGTGTTCAGCTTAATCATGTCCAAGCCTAATGGATTTAAGTACAAAAGCGGACAGTACATATTTTTACAATGCCCAAAAATCTCTCCCTTTGAATGGCACCCATTCTCCATTACCTCAGCGCCTGGAGATGAGTACCTGAGTGTTCACATTCGCACAGTTGGAGACTGGACCCAAGAACTTAAGTTTCTCCTCACCGAAGACGACGAAGATAAATTACCTCCGGTTAATTGTCGGGCAACGTTCGGTGAACTAATGCAAATGGATCAAAGAGGGCAAAGTTTTGGTACACACAGACAACCGAGACTGCTTGTTGATGGCCCTTACGGAGCCCCAGCACAAGATTACCAGAATTTTGATGTACTGCTCCTCATAGGACTAGGAATAGGAGCAACTCCTTTCATTAGCATTCTAAGAGATCTTATCAGTGACACTAGAACAATGGATGAATTAGCGGAGTCAAACACAGAAACAACGAGATCAGATGAGAGCTTCAATAGTTTCACATCCTCCAATTTGACGCCAGGAGGAAACAAGAGATCACGAAGGACTACAAATGCTTATTTCTACTGGGTTACAAGGGAACCTGGTTCTTTTGAATGGTTTAGAGGAGTAATGGACGAAGTTGCAGAGATGGACCACAAAGGTCAAATTGAACTTCACAACTATCTTACTAGTGTCTACGAAGAAGGGGATGCGAGATCAACCTTAATCACCATGATCCAAGCACTGAACCATGCCAAACATGGTGTTGACATCTTATCAGGCACTCGAGTAAGGACACACTTTGCAAGGCCTGATTGGAAGGAAGTTTTCACCAAGATTGCCTCTAAACATCCGTATTCTACAGTAGGGGTGTTTTATTGCGGGATGCCGGTGTTGGCAAAGGAACTAAAGAAGCTATCTCTTGAGCTGAGCCACAAGACAACTACACGCTTCGACTTTCACAAGGAGTACTTTTGA 2454 0.4401 MSSASSESVAAVEDPVVTARNARKMRVKLERTRSSAQRALKGLRFISKSGEASDELWRKVEERFSFLAKDGLLAREDFGECIGMEDSKEFAVCIFDALARRKESKVSKITKEELHQFWLQISDQSFDARLQIFFDMADSNEDGRITRAEVQELIMLSASANKLSKLKEQAEGYAALIMEELDPENLGYIELWQLEMLLLQKDSYMNYSRQLSSASVGWSQNMSGLRRRDEIQRFLRTLQCLALEYWRRGWILLLWLVTIGCLFAWKFYQYKNKSSFQVMSYCIPVAKGAAETLKLNMALILLPVCRNTLTWLRSTRARKFVPFDDNINFHKMIAFAIAVGVAVHAGNHLACDFPLLVNSSPEKFSLISSDFNNKKPTYKTLLTGVEGVTGILMVTLMAISFTLATHHFRKSAVKLPPPFNRLTGFNAFWYSHHLLGLVYVLLLIHGSFLYLTHGWYQKTTWMYISVPLLLYVAERTLRTRRSAHYTVKIQKVSVLPGNVFSLIMSKPNGFKYKSGQYIFLQCPKISPFEWHPFSITSAPGDEYLSVHIRTVGDWTQELKFLLTEDDEDKLPPVNCRATFGELMQMDQRGQSFGTHRQPRLLVDGPYGAPAQDYQNFDVLLLIGLGIGATPFISILRDLISDTRTMDELAESNTETTRSDESFNSFTSSNLTPGGNKRSRRTTNAYFYWVTREPGSFEWFRGVMDEVAEMDHKGQIELHNYLTSVYEEGDARSTLITMIQALNHAKHGVDILSGTRVRTHFARPDWKEVFTKIASKHPYSTVGVFYCGMPVLAKELKKLSLELSHKTTTRFDFHKEYF* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2442 817 Pfam FAD-binding domain 486 609 IPR013112 GO:0016491
Apr1g2442 817 CDD NOX_Duox_like_FAD_NADP 491 769 - -
Apr1g2442 817 ProSiteProfiles EF-hand calcium-binding domain profile. 125 160 IPR002048 GO:0005509
Apr1g2442 817 SUPERFAMILY Riboflavin synthase domain-like 485 609 IPR017938 -
Apr1g2442 817 Gene3D - 29 146 - -
Apr1g2442 817 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 482 612 IPR017927 GO:0016491
Apr1g2442 817 MobiDBLite consensus disorder prediction 655 677 - -
Apr1g2442 817 Pfam Respiratory burst NADPH oxidase 28 128 IPR013623 GO:0004601|GO:0050664
Apr1g2442 817 SFLD NADPH oxidase subgroup (NOX) 26 817 - -
Apr1g2442 817 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 615 817 IPR039261 -
Apr1g2442 817 Coils Coil 19 39 - -
Apr1g2442 817 MobiDBLite consensus disorder prediction 649 677 - -
Apr1g2442 817 PANTHER NADPH OXIDASE 13 817 - -
Apr1g2442 817 Gene3D - 607 817 IPR039261 -
Apr1g2442 817 PANTHER RESPIRATORY BURST OXIDASE HOMOLOG PROTEIN E 13 817 - -
Apr1g2442 817 ProSitePatterns EF-hand calcium-binding domain. 138 150 IPR018247 -
Apr1g2442 817 PRINTS Cytochrome B-245 heavy chain signature 333 351 IPR000778 GO:0016020|GO:0016491
Apr1g2442 817 PRINTS Cytochrome B-245 heavy chain signature 425 445 IPR000778 GO:0016020|GO:0016491
Apr1g2442 817 PRINTS Cytochrome B-245 heavy chain signature 598 611 IPR000778 GO:0016020|GO:0016491
Apr1g2442 817 PRINTS Cytochrome B-245 heavy chain signature 621 638 IPR000778 GO:0016020|GO:0016491
Apr1g2442 817 Gene3D Translation factors 471 570 - -
Apr1g2442 817 SUPERFAMILY EF-hand 45 210 IPR011992 -
Apr1g2442 817 CDD EFh 108 155 IPR002048 GO:0005509
Apr1g2442 817 Pfam Ferric reductase NAD binding domain 616 799 IPR013121 GO:0016491
Apr1g2442 817 Pfam Ferric reductase like transmembrane component 288 443 IPR013130 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2442 Apr-Chr1 34055742 34064104 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2442 7 817 Miscellaneous Gene Families AT1G19230 66.425 0.0 1122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2442 K13447 - gmx:100805697 1450.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2442 1 34055742 34064104 Apr1g2442 1 34055742 34064104 ECH