Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2406 ATGAAAATGCTTCTAATTACCTTCCTTATCTGTTCTCTCCTCTCCCTCTCCCATGCTTCTGTTGTAGACTTCTGTGTAGCAGATTTGACTGGCCCTAATGGGCCTGCAGGGTACTCTTGCAAGAAGCCTGCAAAGGTTACTGTGGATGATTTTGTTTACACTGGCCTTAGCGCTGCTGGCAACACCTCAAACATCATCAAAGCTGCAGTGTCCCCAGCATTTGATGCACAATTTCCTGGAGTGAATGGCCTTGGAATTTCCATTGCCCGTTTGGACATTGAAAAGGGTGGAGTTATCCCACTTCACACACACCCTGGAGCTTCAGAAATCTTAGTTGTTGTGCAAGGGAAAATCTGTGCTGGATTTGTTTCTTCAGATAACACTGTGTACCTTAAAACTCTTCAAAAGGGTGATGTCATGGTGTTCCCTCAAGGCTTGTTGCACTTCCAAATCAATGCTGGCGCCCTTCCAGCTTTGGCTTTTGTGAGCTTCAGCAGTGCCAACCCTGGCCTTCAAATTCTCGACTTTGCTTTGTTCAAAAGTGATTTCCCCACTGATTTGATAGCTGAAACCACTTTTCTTGATGCTGCTCAGATTAAGAAGCTTAAGGGTGTTCTTGGAGGATCAGGTTAA 633 0.4518 MKMLLITFLICSLLSLSHASVVDFCVADLTGPNGPAGYSCKKPAKVTVDDFVYTGLSAAGNTSNIIKAAVSPAFDAQFPGVNGLGISIARLDIEKGGVIPLHTHPGASEILVVVQGKICAGFVSSDNTVYLKTLQKGDVMVFPQGLLHFQINAGALPALAFVSFSSANPGLQILDFALFKSDFPTDLIAETTFLDAAQIKKLKGVLGGSG* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2406 210 PRINTS Germin signature 102 122 IPR001929 GO:0030145
Apr1g2406 210 PRINTS Germin signature 132 152 IPR001929 GO:0030145
Apr1g2406 210 PRINTS Germin signature 165 180 IPR001929 GO:0030145
Apr1g2406 210 Pfam Cupin 56 199 IPR006045 -
Apr1g2406 210 CDD cupin_OxOx 17 206 - -
Apr1g2406 210 ProSitePatterns Germin family signature. 97 110 IPR019780 GO:0030145
Apr1g2406 210 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 7 206 - -
Apr1g2406 210 SUPERFAMILY RmlC-like cupins 21 204 IPR011051 -
Apr1g2406 210 SMART Cupin_1_3 54 200 IPR006045 -
Apr1g2406 210 Gene3D Jelly Rolls 18 209 IPR014710 -
Apr1g2406 210 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 7 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2406 Apr-Chr1 33693427 33694608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2406 1 209 Miscellaneous Gene Families AT5G20630 67.619 3.47e-102 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2406 - - gmx:100806553 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2406 1 33693427 33694608 Apr1g2406 1 33693427 33694608 ECH