Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2403 ATGGCTTCGGTGTACATACCTGTGCAGAATTCGGAGGAGGAGGTTAGGGTTGCTCTCGATCAGCTTCCGAGGGATGCCTCCGACATCCTCGACATCCTCAAGGCTGAACAAGCCCCTCTTGATCTCTGGCTCATCATCGCGAGGGAGTACTTCAAGCAGGGAAAGATTGATCAATTTCGTCAGATTCTGGAGGAAGGATCCAGTCCAGAAATCGATGACTATTATGCTGATGTTAGATATGAGAGAATTGCTATCTTAAATGCCCTTGGGGCTTACTATAGCTACCTTGGAAAAATAGAGACAAAACAAAGGGAGAAGGAGGAGCATTTCATTTTGGCAACACAATATTACAATAAAGCATCAAGGATTGACATGCATGAGCCCTCTACTTGGGTTGGGAAAGGTCAGCTTTTGCTAGCAAAGGGTGAAGTAGAACAGGCCTCTGCTGCATTTAAGATTGTGTTAGATGGAGACCGTGATAATGTTCCCGCTCTTTTGGGCCAGGCATGTGTTGAGTTCAACCGGGGACGATACACTGATTCGCTTGAATTGTATAAGAGGGCATTGCAAGTGTATCCCAATTGCCCTGCATCTGTGAGACTTGGCATAGGTCTATGTCGCTACAAATTAGGTCAATTTGAAAAGGCTCGACAGGCATTTGAGCGCGTTTTACAGCTAGATCCAGAAAATGTCGAGGCTCTTGTTGCACTTGCAATAATGGACTTGCGTACTAATGAAGCTGCTGGAATCAGGAAGGGAATGGTAAAAATGCAGAGGGCATTTGAGATATACCCATACTGTGCAATGGCTCTGAATTATCTTGCGAATCATTTCTTCTTCACTGGTCAACATTTTTTAGTTGAGCAATTGACGGAAACTGCATTAGCTGTTACCAATCATGGTCCAACAAAGTCTCACTCCTACTACAATTTAGCACGCTCTTACCATAGCAAGGGAGACTATGATAAAGCTGGTGTTTATTACATGGCATCTGTCAAGGAAGTCAACAAGCCCCATGAATTTGTGTTTCCTTATTATGGTTTGGGACAAGTGCAGATAAAGTTGGGAGACTTTAAAAGTGCACTCTCAAACTTTGAAAAGGTCTTGGAGGTGTACCCCGATAACTGTGAGACATTGAAAGCGCTTGGGCACATATATGTTCAGCTTGGTCAAACTGACAAGGCGCAGGACTTTATTAGGAAAGCTACCAAAATTGATCCCCGAGATGCTCAGGCATTTCTTGAACTGGGAGAATTGTTAATTCTTTCTGACACAGGAGCTGCACTGGATGCATTCAAAACTGCTCGTACACTTTTTAAGAAGGGAGGTCAGGAAGTACCAATTGAATTATTCAATAATATTGGTGTCCTTCAGTTTGAAAGGGGGGAATTTGAGCTTGCTCAACAAACTTTTAAGGAGGCTCTAGGTGATGGAATTTGGCTCTCTTTCATTAATGAGGAAAATAAATCTTCCATTGATGCTGCTACTTCTACTCTTCAATTCAAGGACATGCAGTTATTTCATGATCTTGAAAGTAACGGTCACCATGTGGAAGTTCCTTGGGATAAAGTCACTGTACTCTTTAACCTGGCTAGATTACTTGAGCAGTTAAATGACTCTGGAACTGCAAGCATATTGTATCGCCTGATCTTGTTCAAGTATCCAGACTATATTGATGCGTATCTGAGGCTAGCTGCAATTGCAAAAGCTCGGAACAACATTTTGTTAAGCATTGAACTGGTTAATGATGCCTTGAAGGTGAATGACAAGTGTCCAAATGCATTATCTATGCTTGGAGAGTTGGAATTGAAAAATGATGATTGGGTGAAAGCAAAAGAAACTCTCCGGTCAGCTAGTGATGCAACTGATGGCAAGGACTCATATGCTACTCTTTCTCTGGGAAACTGGAACTACTTTGCTGCAGTTCGCAACGAGAAGAGAAATCCAAAGCTAGAGGCTACTCATTTGGAAAAGGCCAAGGAACTTTATACTAGAGTTCTTATTCAGCATCCTGCTAATTTATATGCTGCCAATGGTGCTGGGGTAGTCTTAGCAGAAAAAGGCCATTTTGATGTTTCAAAGGACATCTTTACACAGGTTCAAGAAGCTGCCAGTGGTAGTGTTTTTGTCCAGATGCCTGATGTTTGGATAAATCTGGCACATGTTTATTTTGCTCAGGGGAATTTTTCTTTGGCTGTAAAAATGTACCAAAACTGCTTGCGGAAGTTTTATTATAACACAGACTCTCAAATACTTCTATATTTAGCTCGTACCCATTATGAAGCTGAGCAGTGGCAAGACTGTATAAAAACTCTACTGAGAGCCATCCATTTGGCACCCTCAAACTATACTTTAAGGTTTGATGCGGGGGTTGCAATGCAAAAGTTTTCAGCATCAACACTACAAAAGGCAAAGAGAAGTGCAGATGAGGTGAGAGCAACCGTTGCTGAACTGCAAAATGCTGTTCGTGTATTTAGTCAGTTATCTGCTGCTTCCAACCTACATATTCATGGATTTGATGAGAAGAAAATTGACACTCATGTTGGATACTGCAACCACTTACTTACGGCTGCAAAAGTTCATCTTGAAGCAGCTGAGCGTGAGGAGCAGCAAGTCCGACAGAGACAAGAACTTGCTCGACAGGTTGCATTGGCTGAGGAAGCCCGGCGAAAGGCTGAAGAGCAAAGGAAATTTCAGATGGAAAGGAGAAAACAAGAGGACGAAATAAAGCGAGTGCAACAACAGGAGGAACATTTTAAGCGCGTGAAGGAGCAATGGAAGAGCAGCACTCATTCAAAACGGAGGGAAAGGTCAGATGATGAAGAGGGTGGGAATGGGGAGAAGAGGAGAAGAAAAGGCGGAAAGAAGAGAAAGAAGGATAAGCAGTCAAGATCACGCTATGACACAGAGGAAGCAGAAGCGGATATGATGGATGAACAGGAAATGGAGGAGGAAGAAGCTGACATAAACTACAGAGAGGAGCCTCCAAGTCATATGAATGATGACGCTGAGGAAGACGCTCAGGGTCTTCTTGCAGCAGCTGGACTTGAAGATTCTGATGCAGATGACGAGACGGCTGCACCTTCCTCAACCATAGGCAGGCGAAGGCAAGCATTGTCAGAATCTGATGATGATGAACCATTACAGAGGCAGTCAAGTCCTGCAAGAGAAAATTCTGCTGATATGCAGGAGAGTGATGGAGAAATCAGGGATGGGGATAAGAGAAATGGAGATGATGCCAGCGATGAGGAGAAACAATATTGA 3264 0.4323 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFRQILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDRDNVPALLGQACVEFNRGRYTDSLELYKRALQVYPNCPASVRLGIGLCRYKLGQFEKARQAFERVLQLDPENVEALVALAIMDLRTNEAAGIRKGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKSALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKAQDFIRKATKIDPRDAQAFLELGELLILSDTGAALDAFKTARTLFKKGGQEVPIELFNNIGVLQFERGEFELAQQTFKEALGDGIWLSFINEENKSSIDAATSTLQFKDMQLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLNDSGTASILYRLILFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNDKCPNALSMLGELELKNDDWVKAKETLRSASDATDGKDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKAKELYTRVLIQHPANLYAANGAGVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFSLAVKMYQNCLRKFYYNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRSADEVRATVAELQNAVRVFSQLSAASNLHIHGFDEKKIDTHVGYCNHLLTAAKVHLEAAEREEQQVRQRQELARQVALAEEARRKAEEQRKFQMERRKQEDEIKRVQQQEEHFKRVKEQWKSSTHSKRRERSDDEEGGNGEKRRRKGGKKRKKDKQSRSRYDTEEAEADMMDEQEMEEEEADINYREEPPSHMNDDAEEDAQGLLAAAGLEDSDADDETAAPSSTIGRRRQALSESDDDEPLQRQSSPARENSADMQESDGEIRDGDKRNGDDASDEEKQY* 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2403 1087 Coils Coil 801 821 - -
Apr1g2403 1087 Pfam Tetratricopeptide repeat 718 781 - -
Apr1g2403 1087 ProSiteProfiles TPR repeat profile. 376 409 IPR019734 GO:0005515
Apr1g2403 1087 MobiDBLite consensus disorder prediction 972 990 - -
Apr1g2403 1087 MobiDBLite consensus disorder prediction 1061 1087 - -
Apr1g2403 1087 Coils Coil 855 922 - -
Apr1g2403 1087 ProSiteProfiles TPR repeat profile. 342 375 IPR019734 GO:0005515
Apr1g2403 1087 MobiDBLite consensus disorder prediction 894 949 - -
Apr1g2403 1087 SUPERFAMILY TPR-like 115 246 IPR011990 GO:0005515
Apr1g2403 1087 PANTHER RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 1 1044 IPR031101 GO:0006355|GO:0016570
Apr1g2403 1087 Gene3D Tetratricopeptide repeat domain 335 498 IPR011990 GO:0005515
Apr1g2403 1087 Gene3D Tetratricopeptide repeat domain 8 334 IPR011990 GO:0005515
Apr1g2403 1087 ProSiteProfiles TPR repeat profile. 197 230 IPR019734 GO:0005515
Apr1g2403 1087 SMART tpr_5 162 195 IPR019734 GO:0005515
Apr1g2403 1087 SMART tpr_5 558 591 IPR019734 GO:0005515
Apr1g2403 1087 SMART tpr_5 342 375 IPR019734 GO:0005515
Apr1g2403 1087 SMART tpr_5 592 625 IPR019734 GO:0005515
Apr1g2403 1087 SMART tpr_5 305 338 IPR019734 GO:0005515
Apr1g2403 1087 SMART tpr_5 749 782 IPR019734 GO:0005515
Apr1g2403 1087 SMART tpr_5 376 409 IPR019734 GO:0005515
Apr1g2403 1087 SMART tpr_5 448 488 IPR019734 GO:0005515
Apr1g2403 1087 SMART tpr_5 128 161 IPR019734 GO:0005515
Apr1g2403 1087 SMART tpr_5 713 746 IPR019734 GO:0005515
Apr1g2403 1087 SMART tpr_5 197 230 IPR019734 GO:0005515
Apr1g2403 1087 SMART tpr_5 524 557 IPR019734 GO:0005515
Apr1g2403 1087 Gene3D Tetratricopeptide repeat domain 499 631 IPR011990 GO:0005515
Apr1g2403 1087 ProSiteProfiles TPR repeat region circular profile. 342 375 - -
Apr1g2403 1087 Pfam Tetratricopeptide repeat 169 228 - -
Apr1g2403 1087 ProSiteProfiles TPR repeat profile. 162 195 IPR019734 GO:0005515
Apr1g2403 1087 Pfam Tetratricopeptide repeat 306 333 IPR019734 GO:0005515
Apr1g2403 1087 ProSiteProfiles TPR repeat region circular profile. 197 230 - -
Apr1g2403 1087 SUPERFAMILY TPR-like 522 793 IPR011990 GO:0005515
Apr1g2403 1087 MobiDBLite consensus disorder prediction 991 1005 - -
Apr1g2403 1087 MobiDBLite consensus disorder prediction 894 1087 - -
Apr1g2403 1087 Pfam Tetratricopeptide repeat 354 412 - -
Apr1g2403 1087 SUPERFAMILY HCP-like 203 435 - -
Apr1g2403 1087 ProSiteProfiles TPR repeat profile. 713 746 IPR019734 GO:0005515
Apr1g2403 1087 MobiDBLite consensus disorder prediction 1037 1051 - -
Apr1g2403 1087 Gene3D Tetratricopeptide repeat domain 650 835 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2403 K15176 - gmx:100794371 1971.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2403 1 33644052 33659647 Apr1g2403 1 33644052 33659647 ECH