Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2385 ATGACCCACCGTCGCTCGTGGCACTCATCACCACCCTTCATCAGCCCTCCATTGCTCATCATTCTATTCCCTATCGTAATCTTAACGATCCTCTTCCTCGCCGTGCCGCCGCTTCTCTCCGCCGCCACCCGCCTCCTCCGACCAGCCTCTGTCAAAAACAGCTGGGACTCACTGAACATTCTCCTTGTCGTTTTTGCCATTCTGTGCGGCGTTTTCGCAAGACGAAACGACGACGAACCATCCCCAAACAATAATGACCACGACCACGCCGTTCCGGATCGAAACGCTGCGTTTCGCAAAGTGCCGTTGGAAGAGGGACAATGGTTCGGCTTCCCTGAGGAGAGAAAGGTGTACGATGCCCCTCCCTCCCGCTTCCAGTCACCGGCAACCGGCGTTACCCGGTTGAGAAGGAACAGCAGCTCCTACCCAGATCTGCGCCAGTGGGAAACCAGTGATGACCGTTACAAGTTCCGTTTCTATGATGACTTCGAAATCGATAAGCAGTTTCGCTCGCCGTCCAGGGACCACTTCTCCGCCGTGGAACACCGTAAACGGTGGCCGGAATCACCCCAACAACAAGTAGCAGAAGTACATGTTAAGGAAATTCCCGTGGATACATACGAAATTCGTCCTTCGCCGCCGCCGTTGAAGTCACCTACGCCACCACCTCCTCCGCCGCCGCCACCACCACTACCTCCTCCCTCGGAATCAGCTCGTCATAATTCGAGACCCACGAATCGAAAAGTTGAACGAACTCGTGAGATAACTTCCGAGCTTGATGATCGCGAGTTCTCTAGGATCCGGTCCCCGCCGCCGGCTCCTCCGACACCGCCACCGTCGGCGAAGGCACGATCAGAGCACAAACACGGGAAGAGTGAGCGTAGGAAGAGCTCCGTGAAGAGGGAGATAGCAATGGTTTGGGAGTCAGTACTCTCCAATCAGAGAAAGAAAAAGAAGAAACAGAGGACAAAAAATAATCACAATCACAATTACCATTACGATAACGTCGATGAATTAACAAATAACACGACCGTACCACCATCAACGCCGCCACCGCCACCTCCTCCGCCGCCTCCGCCGTCAGTTTTTCACAGTTTATTCAGAAAGGGACCAGGCAAGAACAAGAAAATCCATTCTGTGTCAGCGCCGCCGCCGCCGCCGCCTCCTCCACCGTCAAAGCGGAGGAGCCAGATCCCTCCTCCCCCAGAACCTCCCCGCCGACGAAACCCCGGGAGACCACCGTTGCCGAATAAAACCGTCAACTTTAACGACGAGACAATAAACGCGGGGAACCAGTCGCCTCTGATTCCCGTTCCGCCGCCGCCTCCGCCGTTTAAGATTTCGGCGATGAAGTTCGTAGTTCGCGGGGACTTCGTTAAGATTCGTAGCAACCAGAGCTCGCGATGTAACTCGCCAGAACGCGAGGACATTGATGTGTCAGAAACGACGGTCACCGACGCCGTCACTAACAGCGTTACGGAGCACAACGGCGACGTAAGTGGTTCCGTTTTCTGCCCCAGCCCCGATGTGAATGTTAAGGCTGCAACTTTCATTGCTCGGCTTAGGGGAGAGTGGAGGCTCGAAAAACTCAACTCCTTGAAGAAGAAAAGCAACGCCTCGTTGCTGTGA 1629 0.5488 MTHRRSWHSSPPFISPPLLIILFPIVILTILFLAVPPLLSAATRLLRPASVKNSWDSLNILLVVFAILCGVFARRNDDEPSPNNNDHDHAVPDRNAAFRKVPLEEGQWFGFPEERKVYDAPPSRFQSPATGVTRLRRNSSSYPDLRQWETSDDRYKFRFYDDFEIDKQFRSPSRDHFSAVEHRKRWPESPQQQVAEVHVKEIPVDTYEIRPSPPPLKSPTPPPPPPPPPPLPPPSESARHNSRPTNRKVERTREITSELDDREFSRIRSPPPAPPTPPPSAKARSEHKHGKSERRKSSVKREIAMVWESVLSNQRKKKKKQRTKNNHNHNYHYDNVDELTNNTTVPPSTPPPPPPPPPPPSVFHSLFRKGPGKNKKIHSVSAPPPPPPPPPSKRRSQIPPPPEPPRRRNPGRPPLPNKTVNFNDETINAGNQSPLIPVPPPPPPFKISAMKFVVRGDFVKIRSNQSSRCNSPEREDIDVSETTVTDAVTNSVTEHNGDVSGSVFCPSPDVNVKAATFIARLRGEWRLEKLNSLKKKSNASLL* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2385 542 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 2 536 - -
Apr1g2385 542 MobiDBLite consensus disorder prediction 208 237 - -
Apr1g2385 542 MobiDBLite consensus disorder prediction 380 412 - -
Apr1g2385 542 MobiDBLite consensus disorder prediction 241 267 - -
Apr1g2385 542 MobiDBLite consensus disorder prediction 207 437 - -
Apr1g2385 542 MobiDBLite consensus disorder prediction 419 433 - -
Apr1g2385 542 PRINTS Proline rich extensin signature 202 214 - -
Apr1g2385 542 PRINTS Proline rich extensin signature 214 235 - -
Apr1g2385 542 PRINTS Proline rich extensin signature 271 288 - -
Apr1g2385 542 PRINTS Proline rich extensin signature 339 364 - -
Apr1g2385 542 MobiDBLite consensus disorder prediction 173 195 - -
Apr1g2385 542 MobiDBLite consensus disorder prediction 345 364 - -
Apr1g2385 542 MobiDBLite consensus disorder prediction 173 189 - -
Apr1g2385 542 PANTHER COTTON FIBER (DUF761) 2 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2385 Apr-Chr1 33504909 33506537 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2385 - - gmx:100804824 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2385 1 33504909 33506537 Apr1g2385 1 33504909 33506537 ECH