Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2377 ATGGAGTGCGTTGGAGCCAGAAACTTAACGGCAATGGCGTTTTGCGTAAGCCCTTCTTCCAGGTTGCGTTTACGAAGGAAAAAACTATGGAGAAGACGAAGCTCGTCGTGTGGTCACGCGGTTCGTTTGCGTTCGCGTTGCCTTAAGGTGGAGGCCAAAACCGGTGTAGGGAGTTGCGTCGCCACCAAAGAGGACTTCGCCGATGAGGAAGATTACGTTAAGGCCGGTGGCTCCGAACTTGTTTTCGTGCAAATGCAGCAGAACAAAACCATGGAAATGCAATCCAAGCTTGCGGATAAGTTACCGCCTATCTCTATAGGAGACGATATATTGGATCTAGTTGTGATTGGTTGTGGTCCGGCTGGTCTTGCTCTGGCAGCTGAATCTGGCAAGTTAGGATTAAAAGTTGGGCTTATTGGTCCGGATCTTCCTTTTACAAATAATTATGGTGTGTGGGAGGACGAATTTAAAGGTCTTGGACTTGAAGGTTGTATTGAGCATGTTTGGAAGGATACCATTGTATATCTTGATAATAAGGATCCCATTTTAATTGGACGTTCCTATGGACGTGTCAGTCGGCATTTGCTTCACGAGGAATTGTTAAGAAGGTGTGTCGAGTCAGGTGTCTCATATCTTAGCTCAAGAGTAGAAAGTGTTGTTGAGGCTAGCAATGGTCATAGTCATGTTGTCTGTGACTATGATATTGTAGTGCCTTGCAGGCTTGTTACTGTTGCATCAGGAGCAGCCTCAGGGAAACTGTTGCAATATGAGGTTGGGGGTCCAAAGGTGTCAGTCCAAACAGCTTATGGTGTGGAAGTTGAGGTGGAAAACAATCCTTATGATCCAAATCTGATGGTTTTCATGGATTATAGAGACTACATGAAGCAAAATGTTAAATGTCTAGAAGCAAAGTATCCAACATTTCTCTATGCAATGCCGATGTCCCGTACAAGAGTGTTTTTTGAGGAAACCTGTCTGGCTTCAAAAGATGCCATGCCCTTTGATTTATTAAAGAAAAAGCTCTTTTCAAGATTAAATACAATGGGGATCAAAATTACAAAAACTTATGAAGAGGAATGGTCTTATATCCCAGTTGGTGGGTCCTTGCCCAACACAGAGCAAAAGAACCTTGCATTTGGTGCTGCTGCCAGCATGGTGCATCCAGCCACAGGCTACTCCGTTGTGAGATCTTTGTCAGAGGCTCCAAAATATGCTACAGTAATTGCTACTATTTTGAAAGAGGGTCATGCAAGGGGCATTATTACTCAGGAAAGAAGAAAGGAGAATCTAGCTATGCAAGCTTGGAATACACTGTGGCCACAAGAAAGGAAGCGGCAAAGAGCTTTCTTTCTTTTTGGATTAGCGCTAATTCTACAGCTCGATATTGAGGGCATTAGAACATTCTTTCGTACTTTCTTCTGCTTACCTGATTGGATGTGGCAGGGATTTCTTGGCTCCTCTCTCTCCTCTTCAGATCTTGTATTATTTGCATTCTACATGTTCATAATAGCACCAAATAACTTGAGAATGTGTCTAGTCAAACATCTGCTTTCGGATCCTACTGGGGCAACTATGATAAAGACTTACTTAACGATATAA 1599 0.4321 MECVGARNLTAMAFCVSPSSRLRLRRKKLWRRRSSSCGHAVRLRSRCLKVEAKTGVGSCVATKEDFADEEDYVKAGGSELVFVQMQQNKTMEMQSKLADKLPPISIGDDILDLVVIGCGPAGLALAAESGKLGLKVGLIGPDLPFTNNYGVWEDEFKGLGLEGCIEHVWKDTIVYLDNKDPILIGRSYGRVSRHLLHEELLRRCVESGVSYLSSRVESVVEASNGHSHVVCDYDIVVPCRLVTVASGAASGKLLQYEVGGPKVSVQTAYGVEVEVENNPYDPNLMVFMDYRDYMKQNVKCLEAKYPTFLYAMPMSRTRVFFEETCLASKDAMPFDLLKKKLFSRLNTMGIKITKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYATVIATILKEGHARGIITQERRKENLAMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFCLPDWMWQGFLGSSLSSSDLVLFAFYMFIIAPNNLRMCLVKHLLSDPTGATMIKTYLTI* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2377 532 PANTHER LYCOPENE EPSILON CYCLASE, CHLOROPLASTIC ISOFORM X1 5 490 - -
Apr1g2377 532 SUPERFAMILY FAD/NAD(P)-binding domain 109 505 IPR036188 -
Apr1g2377 532 PANTHER - 5 490 - -
Apr1g2377 532 Pfam Lycopene cyclase protein 112 509 - -
Apr1g2377 532 PRINTS Pyridine nucleotide disulphide reductase class-I signature 112 134 - -
Apr1g2377 532 PRINTS Pyridine nucleotide disulphide reductase class-I signature 242 251 - -
Apr1g2377 532 TIGRFAM carotene-cycl: lycopene cyclase family protein 112 511 IPR010108 GO:0016117|GO:0016705
Apr1g2377 532 Gene3D - 111 471 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2377 Apr-Chr1 33430308 33437086 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2377 K06444 - gmx:100790686 950.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2377 1 33430308 33437086 Apr1g2377 1 33430308 33437086 ECH