Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2356 ATGGAGACTCCTCCTTCGCAACAAGGCATCGTGAAGAAGAAGGAAACGAGGGGTCGAAAACCTAAGCCAAAGGAAGATAAAAAGGAAGAACAACATGGGAAAGCAATGAAGGAAGGGAGAAAGACGCAGCAACAACAACAACCTTCCATTGACGAGAAATACACTCAATGGAAGTCCCTTGTTCCCGTTCTCTATGACTGGCTCGCCAACCACAACCTCGTTTGGCCCTCTCTCTCTTGCCGGTGGGGCCCTCAGCTTGAACAAGCTACCTACAAGAATCGCCAGCGTCTCTACCTTTCGGAGCAGACTGATGGTAGTGTTCCGAATACTCTGGTGATTGCGAACTGTGAGGTTGTGAAGCCTAGGGTTGCAGCTGCTGAGCACATTTCACAGTTTAATGAAGAGGCTCGCTCACCATTTGTGAAGAAGTACAAGACCATCATACATCCAGGCGAGGTGAATAGAATTAGAGAATTGCCCCAAAATTCCAAGATAGTGGCCACACACACGGACAGCCCAGATGTCCTTATTTGGGATGTTGAAAATCAACCTAACCGTCATGCTGTCCTTGGAGCTACAAACTCTCGTCCAGATTTGATATTGACTGGACACCAAGATAATGCAGAATTTGCTCTTGCAATGTGCCCAACTGAACCCTATGTTCTTTCAGGAGGAAAGGACAGAACAGTGGTGTTGTGGAGTATTGAAGACCATATAACATCTGCTGCCACTGACTCCAAAGCTGGTGGGTCAATTATCAAACCAAACTCCAAATCTGGAGAAGGCAATGATAAAACTGCTGATGGTCCTTCTGTTGGACCACGAGGTATCTACTGTGGCCATGAGGATACTGTTGAAGATGTGACTTTCTGCCCATCTAGTGCACAAGAGTTCTGTAGCGTTGGAGATGATTCTTGTCTCATCTTATGGGATGCACGTGTTGGCTCTAGTCCTGTGGTTAAGGTTGAAAAAGCTCATAATGCTGATCTTCACTGTGTTGACTGGAACCCCCATGATGATAATCTGATTCTTACTGGGTCAGCAGATAATTCTGTTCGCATGTTTGATCGTCGAAATCTCACCGCTAATGGAGTTGGGTCACCTATTCATAAATTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGATAAATCATCTATATTTGGAAGTTCAGCAGAAGATGGTCTCTTGAACATTTGGGACTATGAGAAGGTTGGTAAAAAGATAGAGCGATCTGGAAAATCGATAAGTTCTCCTCCAGGGTTGTTTTTCCAGCATGCAGGCCATAGAGACAAAGTGGTTGACTTTCACTGGAATGCATATGATCCGTGGACAATTGTCAGTGTGTCTGATGACTGTGAAAGTACTGGTGGAGGGGGAACATTGCAGATATGGCGCATGAGTGATTTGATCTACAGACCAGAAGAGGAGGTTTTGGCTGAGCTGGAGAAATTCAAGTCTCATGTGGTGGCCTGTGCTTCAAAGCCTGAAAAATGA 1509 0.4553 METPPSQQGIVKKKETRGRKPKPKEDKKEEQHGKAMKEGRKTQQQQQPSIDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVENQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDRTVVLWSIEDHITSAATDSKAGGSIIKPNSKSGEGNDKTADGPSVGPRGIYCGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTANGVGSPIHKFEGHKAAVLCVQWSPDKSSIFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEEEVLAELEKFKSHVVACASKPEK* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2356 502 Pfam WD domain, G-beta repeat 199 234 IPR001680 GO:0005515
Apr1g2356 502 Pfam WD domain, G-beta repeat 366 405 IPR001680 GO:0005515
Apr1g2356 502 Pfam WD domain, G-beta repeat 324 356 IPR001680 GO:0005515
Apr1g2356 502 Pfam WD domain, G-beta repeat 276 311 IPR001680 GO:0005515
Apr1g2356 502 MobiDBLite consensus disorder prediction 244 264 - -
Apr1g2356 502 MobiDBLite consensus disorder prediction 19 39 - -
Apr1g2356 502 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 356 IPR001680 GO:0005515
Apr1g2356 502 MobiDBLite consensus disorder prediction 244 271 - -
Apr1g2356 502 Gene3D - 26 488 IPR015943 GO:0005515
Apr1g2356 502 MobiDBLite consensus disorder prediction 1 51 - -
Apr1g2356 502 SUPERFAMILY WD40 repeat-like 139 497 IPR036322 GO:0005515
Apr1g2356 502 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 323 356 - -
Apr1g2356 502 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 372 407 - -
Apr1g2356 502 ProSiteProfiles Trp-Asp (WD) repeats profile. 372 407 IPR001680 GO:0005515
Apr1g2356 502 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 320 IPR001680 GO:0005515
Apr1g2356 502 SMART WD40_4 365 405 IPR001680 GO:0005515
Apr1g2356 502 SMART WD40_4 194 234 IPR001680 GO:0005515
Apr1g2356 502 SMART WD40_4 271 311 IPR001680 GO:0005515
Apr1g2356 502 SMART WD40_4 316 356 IPR001680 GO:0005515
Apr1g2356 502 SMART WD40_4 140 179 IPR001680 GO:0005515
Apr1g2356 502 SMART WD40_4 423 470 IPR001680 GO:0005515
Apr1g2356 502 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 52 118 IPR022052 -
Apr1g2356 502 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 22 500 - -
Apr1g2356 502 PANTHER WD40 REPEAT FAMILY 22 500 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2356 280 465 Miscellaneous Gene Families AT5G08390 26.425 2.29e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2356 K10752 - gmx:100779302 980.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2356 1 33223417 33238413 Apr1g2356 1 33223417 33238413 ECH