Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2344 ATGATCAAAGGTAAAGACATTTACGAAGTGTTGGCATCACTTGCGCCCCTCTACGTGGCTTTCATCCTAGCCTATGGCTCAGTACGTTGGTGGAAGATCTTCACTCCAGAACAGTGCTCTGGCATAAACCGCTTTGTGGCAGTGTTTGCAGTTCCTTTCCTTTCTTTCCATTTCATATCATCCAATAACCCTTACACTATGAACTTAAAGTTCATAGCCGCGGATTCTCTTCAAAAAGTTGTGATTTTGGTGGGTCTTTTTCTATGGAACACTTTCACAAAGTGGGGTAGCATTGATTGGACGATCACATTTTTCTCACTTTCCACTTTGCCAAACACACTCATCATGGGGATCCCTCTTTTGAAGGCCATGTATGGAGACTTCACAGCAAGCCTCATGGTCCAAATTGTGGTTTTGCAAAGTCTCATATGGTACACTCTTATGTTGTTCATGTTTGAATATAGAGGGGCTAAGCAACTTCTTTTTGAACAATTCCCTGAGAGTGCAGGGGCCATAACCTCCCTAAGGGTTGATTCAAATGTTAGTTCACTCAATGATAAGGAATCTTTGCAAGCTGATGCAGAGATTGTTGAAAATGGGAATCTTCATGTGGTGGTGAGGAGTTTGTCACGTTCTACATCTATGCTTCCTTCATTCAATAAGTCCCATTCAATTTCAACACCTAGATCATCAAACCTTTCTGGGGTTGAGATTTATCCGGTTCAGTCATATAAAGAACCAAGGCAAAGAGCTTCAAGTTATAGTGACACAAATTTCCACACATCTAGTCTCAAAAGGGTTAGTTTTGAAGAGGAGATGCTGAAAATGAATAAGAACAAATTTTGGAGGAGCAAGAGTTGTAGTGATGAGGTTTTTAATGGGGGTTTGGTTTCTAACCCGTTCTTAAAGCCAATGTTTCCTGGGTCAAACAGTTTTGGTCAAAGAAATAAAGATATGAGTGGTGGCAGTGGCGGTGCAAGTAACAAGGAGTTGCGCATGTTTGTGTGGAGCTCAAGTGCATCACCAAATTCTGATGTTAGACATGCAGTGAATAGAGTTGCTTCTGCTAACTTTGGGTCCATTGAACTTTCTAAGGCTCTTGGTATTCCACAAGAAACTAATGCCTCCAAAGCTGTGCATGAATTGATTGGCGTGAGTCGTAGTCCTGATGAAAACAGAGAGAGGAAGCTTGACGTAGAGGAAAGAATAACGGGTAGCCGGAAGGAGTTGAACACTGAAGAAGGCAATGCAAACAGAAAACAGCAAATGCCAAGTGCTATTGTGATGACAAAGCTCATTATCATCATGGTTTGGAGAAATCTCATAAGAAATCCCAATACATACGCAAATGTTTTGGGTCTCGTTTGGTCTCTCGTGTCATTTAAGTGGAACATCCAATTGCCGTCTATTGTCAAAGGTTCCATTTCCATAATGTCTAATACTGGGCTGGGAATGGCCATGTTTAGTCTAGGACTGTTCATGGCATTACAACCTAAGTTCATTACTTGCGGAAAAACTCGCGCTGCGATTTCGATGGGAATTAGATTCTTGATTGGTCCCGCAGTGATAGCTGCAACTTCCAAAGTGATGAGTATCCATGGAGTTCTTTTACAGGTTGCAATTGTTCAGGCTGCTCTTCCCGAGGGTATCGTTCCATTTGTATTCGCCAAGGAGTACAATCTACACGCAGACATACTCAGCACTGCGGTTATCTTTGGAATGATAATGGCATTGCCCGTAACAATAACCTACTACGCGCTTCTTGGACTCTGA 1773 0.4213 MIKGKDIYEVLASLAPLYVAFILAYGSVRWWKIFTPEQCSGINRFVAVFAVPFLSFHFISSNNPYTMNLKFIAADSLQKVVILVGLFLWNTFTKWGSIDWTITFFSLSTLPNTLIMGIPLLKAMYGDFTASLMVQIVVLQSLIWYTLMLFMFEYRGAKQLLFEQFPESAGAITSLRVDSNVSSLNDKESLQADAEIVENGNLHVVVRSLSRSTSMLPSFNKSHSISTPRSSNLSGVEIYPVQSYKEPRQRASSYSDTNFHTSSLKRVSFEEEMLKMNKNKFWRSKSCSDEVFNGGLVSNPFLKPMFPGSNSFGQRNKDMSGGSGGASNKELRMFVWSSSASPNSDVRHAVNRVASANFGSIELSKALGIPQETNASKAVHELIGVSRSPDENRERKLDVEERITGSRKELNTEEGNANRKQQMPSAIVMTKLIIIMVWRNLIRNPNTYANVLGLVWSLVSFKWNIQLPSIVKGSISIMSNTGLGMAMFSLGLFMALQPKFITCGKTRAAISMGIRFLIGPAVIAATSKVMSIHGVLLQVAIVQAALPEGIVPFVFAKEYNLHADILSTAVIFGMIMALPVTITYYALLGL* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2344 590 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 590 - -
Apr1g2344 590 Pfam Membrane transport protein 10 585 IPR004776 GO:0016021|GO:0055085
Apr1g2344 590 MobiDBLite consensus disorder prediction 385 415 - -
Apr1g2344 590 TIGRFAM 2a69: auxin efflux carrier 1 590 IPR014024 -
Apr1g2344 590 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 1 590 IPR033526 GO:0010315|GO:0010329
Apr1g2344 590 MobiDBLite consensus disorder prediction 385 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2344 Apr-Chr1 33095067 33099321 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2344 1 590 Organic Solute Cotransporters AT1G23080 48.963 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2344 K13947 - tcc:18589454 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2344 1 33095067 33099321 Apr1g2344 1 33095067 33099321 ECH