Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2314 ATGTCGTTCCACCAAAGACCCTTCTCCTCACAAGCCCTCTCTCTCCAAACCTTACTCAAACGTGGCTTCACCCCCACTCTAAAACCCATCAATCGCTTCATCCTCTTCCTCTTCAACCTTCACAAGTTCGACCTAATCATCCATTTGTTCTCTCAGTTCAACACCAACAATGTCCCAGTCAACCACCAAACACGTTCAATTCTCACGTGGGCACTCCTCAAATCTCACAGATTCGAGGAAGCAGAACAATTCATGAACACCCACATGCATATCACTCACTCTTTCATGTGGGACTCTCTTATCCAAGGTTTCTGTGTGAAGCATCAAGACCCCGAAAGGGCACTCTCAGTTTTGCAAAGTTGCATAAGGGACCATGGTGTGTTACCCTCTTCCTTCACTTTCTGTTCCATTGTTCACAAATTGAGCTCGAAGGGTCTCATGGGTAAGGCCATTGAGGTGTTGGAGTTGATGGCTGAGGATGGTGTTAAGTACCCTTTTGATGATTTTGTGTGTAGTTCTGTAATTTCTGGGTTCTGTAGGATTGGAAAACCGGAACTTGCTTTGGGGTTCTTCCAGAATGCTACTGGTTCTGGCTTGTTGAGGCCCAATGTGGTGACTTGCACGGCTCTTGTGGGTGCTCTTTGTAAATTGGGAAGGGTTGATGAAGTGTGTGATTTGGTTCAATGGATGGAGAAGGAAGGGTTGGGTTTGGATGTTGTTTTGTATAGTGCTTGGGCTTACGGGTATGTTGAAGGGAAGGATTTGGTGGAGGTTTTTAGGAGGATGAGAGAAATGGTGGAGAAGGGTTTTGATCATGATGTTGTGAGTTATACCATACTCGTAGATGGGTTTTCCAAGTTTGGTGATGTGGAAAAGTCGTTTACTTTCTTGGCCAAGATGATAAAAGGAGGATGCAGACCCAATAAGGTTACATTTAGTGCAATCATGTCTGCGTTTTGTAAGAAGGGTAAGGTAGAGGAAGCATTTACTGTTTTTAAGAGCATGAAAGACTTGGGAATTGAACTAGATGAATTTGTGTTTGTGATTTTGATTGATGGGTTTGGAAGGAGAGGAGATTTTGATAATGTGTTTTGTCTGTTTGATGAAATGGAGAAGAGTGGGATTAGTCCTAGTGTTGTTACATTCAATGCTGTTATAAATGGTTTATCCAAGTATGGAAGGACATCCGAGGCAGACGAATTTTCAAAAGATGTTTCTGCAGATGTGATTACGTACAGCACGTTGTTGCATGGGTATACTGAAGAAGAGAACATTACGGGGATTTTGCAAACTAAGAGGCGACTAGAAGAAGCAGGAATAGCTATGGATGTTGTGATGTGTAATGTACTGATCAAAGCACTGTTTATGATTGGGGCTTTTGAAGACGTTTATGCACTTTACAAAGGAATGCTGGAAATGAATCTGGTTCCGAATTCTGTGACTTACTGCACAATGATTGATGGGTATTGCAAGGTAGGTAGAATTGACAAGGCACTTGAGGTATTTGATCAATTTAGGAAGACATCAATTTCTTCAGATGCATGCTACAATAGTATTATTAATGGCCTTTGCAAAATGGGTATGGAAGAAATGGCCATTGAGGCATTGCGTGAACTCTCTCATAAAGGTCTTGAGTTGGATATAGGCACATATAGGATGTTAATGAACACAATATTTAAAGAAAACAATACAAAAGAGGCTTTAGATTTGGTTTACAGAATGGAAGGTCTGGGGCCAGACATATATGATGCTGTATGTAATGATTCCATCTTTTTATTATGTCAAAGAGGATTAGTTGATGATGCAAATCAATTGTGTATGATGATGAAAAGGAAAGGCTTATGTGTCACAACCAAGTCTTATTATTTGATTTCAAGAGGGCATCTTTGTAGTGGGAATAGGGAGCAAATTTTGCCCCTTTTGAATAGTTTTCTGAAAGAACATGGTCTAGTTGAACCAATGGTACAAAAGATACTTGCATGCTACCTCTGTCTGAAAGATGTCAACAGCACCCTTCGATTTCTTGGGAAAACAGTGGATAACTCTTCAGCAGTCACTTTTCCTGTCTCCATTCTCAAGATTCTTGTAAAGGAGGGTAGAGCTCTAGATGCATTTAAACTTGTCATGGAGAGTCAAGATAATTTACCAGTAATGTATGTTGACTATGCCATTGTGATTGATGGCTTGTGCAAGGAAGGATATATCAATAAAGCATTGGATCTTTGTGCCTCTGTTGAAAACAAAGGAATGAATTTGAATATAGTCATATATAATTCAATAATAAATGGGTTGTGCCACGAGGGACGTCTTATTGAAGCATTTCGGCTATTTGATTCATTAGAGAAACTTAATTTGATACCATCTGAAATAACTTATGCTACATTAATTTATGCTCTATGTAGGGAGGGATTTTTGCTAGATGCAGAACATGTTTTCAGGAAAATGATCCTGAAAGGCTTTCAACCAAAAATACAAGTTTACAATTCAATACTTAATGGTATTTGTAAGTTTGGTCAATTAGAGAAGGCATTTGAGTTTCTAAATGATATGGAGATGAATAATATTGAGCCTGACAACCTGACTGTTAGTGCTGTAATTAATTGCTATTGCCAGAAGGGTGAGATGGAAGGAGCCCTTGAATACTATAATAAGTTCAAGAGGAAGGACATATCACCGGATTTTTTGGGGTTCTTGTATTTGATAAGAGGTCTATGTGCCAAGGGAAGAATGGAAGAAACCAGGAGTGTTATGATAGAAATGCTCCAGTCCAAGGATGTGACCGAGATAATTAACTTAGTCAATAAGGAGGTTGAAACTGAGTCGATAAGTGATTTTATGGCCGCTTTGTGCAAGGAAGGAAGGATTCAAGAAGCTGTTACGGTTCTCAATGAAATTGCATGTATACTTTTTCCTGTTCAAAGGTTGTCCACTTATAATCAAGCATTCCATAAACAGCAGAAGATTTATGAATGGAACGATTTTGGTTCAAAATCTTCAAGCATTCTACCTTCCTCTTGCAAGAGCAGTTTGAGTTTTGGATCTTGTGATGAGAAAGATGTAAGGAATCTTTCAACAGTTAATGGTAGTTGTATGACAAGATCCCAGCTGCCTGCCTTTGACTTCTATTATTCTAGAATTGCTGCACTTTGTGCCAAAGGGGAGTTGCAGAAAGCCAATCAATCAGCAAAAGAAATGCTTTCTGACCTGATGGAGTCTATAAACTGA 3225 0.3944 MSFHQRPFSSQALSLQTLLKRGFTPTLKPINRFILFLFNLHKFDLIIHLFSQFNTNNVPVNHQTRSILTWALLKSHRFEEAEQFMNTHMHITHSFMWDSLIQGFCVKHQDPERALSVLQSCIRDHGVLPSSFTFCSIVHKLSSKGLMGKAIEVLELMAEDGVKYPFDDFVCSSVISGFCRIGKPELALGFFQNATGSGLLRPNVVTCTALVGALCKLGRVDEVCDLVQWMEKEGLGLDVVLYSAWAYGYVEGKDLVEVFRRMREMVEKGFDHDVVSYTILVDGFSKFGDVEKSFTFLAKMIKGGCRPNKVTFSAIMSAFCKKGKVEEAFTVFKSMKDLGIELDEFVFVILIDGFGRRGDFDNVFCLFDEMEKSGISPSVVTFNAVINGLSKYGRTSEADEFSKDVSADVITYSTLLHGYTEEENITGILQTKRRLEEAGIAMDVVMCNVLIKALFMIGAFEDVYALYKGMLEMNLVPNSVTYCTMIDGYCKVGRIDKALEVFDQFRKTSISSDACYNSIINGLCKMGMEEMAIEALRELSHKGLELDIGTYRMLMNTIFKENNTKEALDLVYRMEGLGPDIYDAVCNDSIFLLCQRGLVDDANQLCMMMKRKGLCVTTKSYYLISRGHLCSGNREQILPLLNSFLKEHGLVEPMVQKILACYLCLKDVNSTLRFLGKTVDNSSAVTFPVSILKILVKEGRALDAFKLVMESQDNLPVMYVDYAIVIDGLCKEGYINKALDLCASVENKGMNLNIVIYNSIINGLCHEGRLIEAFRLFDSLEKLNLIPSEITYATLIYALCREGFLLDAEHVFRKMILKGFQPKIQVYNSILNGICKFGQLEKAFEFLNDMEMNNIEPDNLTVSAVINCYCQKGEMEGALEYYNKFKRKDISPDFLGFLYLIRGLCAKGRMEETRSVMIEMLQSKDVTEIINLVNKEVETESISDFMAALCKEGRIQEAVTVLNEIACILFPVQRLSTYNQAFHKQQKIYEWNDFGSKSSSILPSSCKSSLSFGSCDEKDVRNLSTVNGSCMTRSQLPAFDFYYSRIAALCAKGELQKANQSAKEMLSDLMESIN* 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2314 1074 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Apr1g2314 1074 Gene3D Tetratricopeptide repeat domain 405 542 IPR011990 GO:0005515
Apr1g2314 1074 Gene3D Tetratricopeptide repeat domain 663 851 IPR011990 GO:0005515
Apr1g2314 1074 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Apr1g2314 1074 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Apr1g2314 1074 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 858 892 IPR002885 -
Apr1g2314 1074 Pfam PPR repeat 205 234 IPR002885 -
Apr1g2314 1074 Pfam PPR repeat 132 162 IPR002885 -
Apr1g2314 1074 Pfam PPR repeat 515 543 IPR002885 -
Apr1g2314 1074 Pfam PPR repeat 946 965 IPR002885 -
Apr1g2314 1074 Pfam PPR repeat 380 400 IPR002885 -
Apr1g2314 1074 Pfam PPR repeat 275 305 IPR002885 -
Apr1g2314 1074 Pfam PPR repeat 170 192 IPR002885 -
Apr1g2314 1074 Pfam PPR repeat 592 614 IPR002885 -
Apr1g2314 1074 Pfam PPR repeat 722 749 IPR002885 -
Apr1g2314 1074 Pfam PPR repeat 900 923 IPR002885 -
Apr1g2314 1074 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Apr1g2314 1074 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Apr1g2314 1074 PANTHER ATPASE EXPRESSION PROTEIN 3 49 543 - -
Apr1g2314 1074 PANTHER ATPASE EXPRESSION PROTEIN 3 690 758 - -
Apr1g2314 1074 PANTHER ATPASE EXPRESSION PROTEIN 3 748 1070 - -
Apr1g2314 1074 PANTHER ATPASE EXPRESSION PROTEIN 3 541 650 - -
Apr1g2314 1074 Gene3D Tetratricopeptide repeat domain 852 925 IPR011990 GO:0005515
Apr1g2314 1074 Gene3D Tetratricopeptide repeat domain 338 404 IPR011990 GO:0005515
Apr1g2314 1074 Gene3D Tetratricopeptide repeat domain 230 337 IPR011990 GO:0005515
Apr1g2314 1074 Gene3D Tetratricopeptide repeat domain 92 158 IPR011990 GO:0005515
Apr1g2314 1074 Gene3D Tetratricopeptide repeat domain 159 229 IPR011990 GO:0005515
Apr1g2314 1074 Pfam PPR repeat 474 504 IPR002885 -
Apr1g2314 1074 Pfam Pentatricopeptide repeat domain 403 453 IPR002885 -
Apr1g2314 1074 Pfam PPR repeat family 753 801 IPR002885 -
Apr1g2314 1074 Pfam PPR repeat family 822 871 IPR002885 -
Apr1g2314 1074 Pfam PPR repeat family 310 354 IPR002885 -
Apr1g2314 1074 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Apr1g2314 1074 PANTHER FERTILITY RESTORER-LIKE 690 758 - -
Apr1g2314 1074 PANTHER FERTILITY RESTORER-LIKE 49 543 - -
Apr1g2314 1074 PANTHER FERTILITY RESTORER-LIKE 541 650 - -
Apr1g2314 1074 PANTHER FERTILITY RESTORER-LIKE 748 1070 - -
Apr1g2314 1074 Gene3D Tetratricopeptide repeat domain 560 662 IPR011990 GO:0005515
Apr1g2314 1074 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 788 822 IPR002885 -
Apr1g2314 1074 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
Apr1g2314 1074 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Apr1g2314 1074 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 129 IPR002885 -
Apr1g2314 1074 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 753 787 IPR002885 -
Apr1g2314 1074 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 823 857 IPR002885 -
Apr1g2314 1074 SUPERFAMILY TPR-like 454 725 IPR011990 GO:0005515
Apr1g2314 1074 TIGRFAM PPR: pentatricopeptide repeat domain 205 238 IPR002885 -
Apr1g2314 1074 TIGRFAM PPR: pentatricopeptide repeat domain 275 308 IPR002885 -
Apr1g2314 1074 TIGRFAM PPR: pentatricopeptide repeat domain 861 893 IPR002885 -
Apr1g2314 1074 TIGRFAM PPR: pentatricopeptide repeat domain 790 822 IPR002885 -
Apr1g2314 1074 TIGRFAM PPR: pentatricopeptide repeat domain 755 788 IPR002885 -
Apr1g2314 1074 TIGRFAM PPR: pentatricopeptide repeat domain 346 379 IPR002885 -
Apr1g2314 1074 TIGRFAM PPR: pentatricopeptide repeat domain 480 513 IPR002885 -
Apr1g2314 1074 TIGRFAM PPR: pentatricopeptide repeat domain 310 344 IPR002885 -
Apr1g2314 1074 TIGRFAM PPR: pentatricopeptide repeat domain 826 858 IPR002885 -
Apr1g2314 1074 TIGRFAM PPR: pentatricopeptide repeat domain 445 478 IPR002885 -
Apr1g2314 1074 TIGRFAM PPR: pentatricopeptide repeat domain 722 753 IPR002885 -
Apr1g2314 1074 TIGRFAM PPR: pentatricopeptide repeat domain 515 547 IPR002885 -
Apr1g2314 1074 Coils Coil 1052 1072 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2314 493 921 Glycosyltransferase AT1G05670 28.767 2.54e-37 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2314 - K17964 gmx:100783405 1719.52