Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2297 ATGGAACATCCTTCGGAGCCGCCGACTACCGGCGCCGGTGCCGGTGAAACCATAAGCAAGAATGCACTGAAGAGGGAACTGAAGAACAAGCAGAAAGAAGAAGAAAGGAAACGCAAGGAGGAGGAGAAGGCCAAAAAGGCAGCTGAAATGCAAAAGGCTAAAGATAACAAATCTGCAACTGCCGATGATGAAGATATGGACCCAACGCAATACCTTGAGAACAGGCTTAAGTATCTTGCAGCTCAAAAGGCGGAAGGGAATAATCCGTATCCGCACAAGTTCTATATCACTATGTCTATTGATCAATACATCAAAGAGTATGGAGGTTTAAGGGATGGGCAGCACCTGGATGATGTCTCTGTCTCCTTGGCTGGCCGAATCATGCACAAGCGTGCATCTGGTTCTAAGCTTGTCTTTTATGATCTGCATGGTGGAGGTTTCAAGGTTCAGGTTATGGCTGATGCCAGTAAGTCAGACTTGGATGAAGCTGAGTTTTCCAAATTCCATTCTAATGTGAAGCGTGGTGATATTGTTGGTATCACTGGGTTTCCAGGCAAAAGTAAGAAGGGTGAGCTTAGTATTTTCCCCAAGACTTTTGTGGTGCTGTCTCATTGTCTGCATATGATGCCAAGGCAAAAGTCTGCGGCTGCTGCTGATAATGCTAATTTGAAGAGAAATCCATGGGTACCAGGAAGTACCAGGAATCCTGAAATGTACATTTTAAAAGATCAGGAAACAAGATATCGGTTACGCCATTTGGATTTGATGATTAATCCAGAGGTTCGAGAAATATTTAAGACAAGGTCTAAAATCATTTCTTACATTAGGAGGTTCCTTGATGACCTTGATTTCTTGGAGGTCGAAACACCTATGATGAACATGATTGCAGGTGGAGCTGCTGCACGTCCATTTGTAACCCATCACAATGATCTTAACATGAGGTTATTCATGAGAATTGCTCCAGAACTCTATCTTAAGGAGTTGGTTGTTGGTGGGCTGGATCGTGTTTATGAAATTGGTAAACAATTCAGGAATGAGGGCATTGATTTGACCCATAATCCTGAGTTTACTACCTGTGAGTTCTATATGGCTTATAAGGACTACAATGACTTAATGGAAATAACAGAACAAATGCTGAGTGGTATGGTCAAGGAACTTACAAAAGGCAGCTACAAAATCAAGTATCATGCTGATGGGATTGATAAGGATCCTATTGAAATTGACTTTACTCCTCCTTTCAGAAGGCTTGACATGATTGATGAGTTAGAGAAGTTGGCAGGCCTCAGTATTCCCAAAGACTTGTCAAGTGAGGAAGCTAATCAATATCTGAAGGATGCATGCTTGAAGTATGACATCAAATGTCCTCCCCCAGAAACAACTGCTCGATTGTTGGATAAACTTGTGGGGCACTTTTTGGAAGAAACGTGTGTAAATCCTACATTCATTATAAACCATCCTGAGATAATGAGTCCTTTAGCAAAGTGGCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTATTTGTTAATAAACGTGAACTTTGCAATGCATATACTGAATTGAACGACCCTGTAGTGCAGCGCCAGAGATTTGCTGAACAACTCAAGGATCGGCAATCAGGTGATGATGAAGCAATGGCCTTAGATGAAACATTTTGTACAGCTTTGGAGTATGGCTTGCCGCCTACTGGTGGTTGGGGTTTGGGTATTGATCGGTTGACCATGTTACTGACTGATTCACAGAATATTAAGGAGGTTCTTCTCTTCCCTGCTATGAAACCTCAAGATTGA 1794 0.4225 MEHPSEPPTTGAGAGETISKNALKRELKNKQKEEERKRKEEEKAKKAAEMQKAKDNKSATADDEDMDPTQYLENRLKYLAAQKAEGNNPYPHKFYITMSIDQYIKEYGGLRDGQHLDDVSVSLAGRIMHKRASGSKLVFYDLHGGGFKVQVMADASKSDLDEAEFSKFHSNVKRGDIVGITGFPGKSKKGELSIFPKTFVVLSHCLHMMPRQKSAAAADNANLKRNPWVPGSTRNPEMYILKDQETRYRLRHLDLMINPEVREIFKTRSKIISYIRRFLDDLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMRLFMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYKDYNDLMEITEQMLSGMVKELTKGSYKIKYHADGIDKDPIEIDFTPPFRRLDMIDELEKLAGLSIPKDLSSEEANQYLKDACLKYDIKCPPPETTARLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRSKPGLTERFELFVNKRELCNAYTELNDPVVQRQRFAEQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQD* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2297 597 MobiDBLite consensus disorder prediction 1 67 - -
Apr1g2297 597 PRINTS Lysyl-tRNA synthetase signature 280 290 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Apr1g2297 597 PRINTS Lysyl-tRNA synthetase signature 296 312 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Apr1g2297 597 PRINTS Lysyl-tRNA synthetase signature 325 338 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Apr1g2297 597 PRINTS Lysyl-tRNA synthetase signature 343 360 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Apr1g2297 597 PRINTS Lysyl-tRNA synthetase signature 478 494 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Apr1g2297 597 MobiDBLite consensus disorder prediction 21 67 - -
Apr1g2297 597 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 265 595 IPR006195 -
Apr1g2297 597 Hamap Lysine--tRNA ligase [lysS]. 74 596 IPR002313 GO:0004824|GO:0005524|GO:0006430
Apr1g2297 597 Pfam tRNA synthetases class II (D, K and N) 243 593 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Apr1g2297 597 SUPERFAMILY Class II aaRS and biotin synthetases 243 594 IPR045864 -
Apr1g2297 597 Gene3D - 62 210 IPR012340 -
Apr1g2297 597 SUPERFAMILY Nucleic acid-binding proteins 66 210 IPR012340 -
Apr1g2297 597 CDD LysRS_core 258 595 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Apr1g2297 597 PIRSF LysRS2 9 597 IPR034762 GO:0004824|GO:0005524|GO:0006430
Apr1g2297 597 Pfam OB-fold nucleic acid binding domain 121 198 IPR004365 GO:0003676
Apr1g2297 597 PANTHER LYSINE--TRNA LIGASE 9 597 - -
Apr1g2297 597 CDD LysRS_N 120 255 IPR044136 GO:0000166
Apr1g2297 597 Coils Coil 20 56 - -
Apr1g2297 597 PANTHER LYSYL-TRNA SYNTHETASE 9 597 - -
Apr1g2297 597 Gene3D Bira Bifunctional Protein; Domain 2 239 597 IPR045864 -
Apr1g2297 597 TIGRFAM lysS_bact: lysine--tRNA ligase 235 596 IPR002313 GO:0004824|GO:0005524|GO:0006430
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2297 Apr-Chr1 32488344 32494907 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2297 K04567 - gmx:100809106 1104.74