Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2295 ATGCCAATCACTACTTTCACTGTGACTCATCTCTCTCTATCTTCTTTTCCCCACACCTCTCCAATTGCTTACAAGTCACAGTCTCAGCCTTATTCTGAACCCAAAACTCATCTTCTTCTGTTGCCACTGCACTTCCTTGTGGCAATGGAGGGTACCCTCTTCCCCAATAGGCCAGTTTTACCCTCCACACCGCACAAACCTACACACCCTTTGAAATTCAAACCAACTTTTTTACCACCACCCTCTCCCCCTCCTCCTCCTCCTCCTTCCTTTCATTTAGATTCCCTTCTCCAACATCTCAATCATCTCTCTTCAGTTCCCATCACCTCTCACACCCTCACACTTGTGCCTCCAATTCATGATAATAACACAACCCATTTCCAAGATTCTCTTATTTCAGAGCACCCCATTTCGCCCTCTGCCCCTCAGGACCACTTTGATGATGCAAATTTTAAATTTTTATCAGAAAAGGGTAAGTTTATGCTGAATTCAATTGTTGGGTCACCCTTGCATGAATTGAATGCTTTCTTCAACTCTGTCAAGTTTGATTTGCTTGAGGTTGACTTTCCCAGCTTGTTGAAAGCTTTGGACCTTTCTGGAAACTGGGAAAGAGCACTCTTGCTGTTTGAATGGATTTGGTTGCATAGTGGGAATGATCAGAAGAATGTCAGGGTGGATAATCAGGTTGTTGAATTTATGGTTAGGATATTGGGGAGAGAGTCACAGCATTCAATTGTGTGCAAGTTGTTTGATTTTATTCCTGTTGAAGAGTACTCACTTGATGTAAGGGCTTGCACCACTATTCTTCATGCATATGCTCGCACTGGCAAGTATAAACGGGCTATTCATATGTTTGAGAAGATGAAGGAGACTGGTCTTGATCCAACTTTGGTCACTTACAATGTTATGCTTGATGTTTATGGCAAGATGGGTAGGTCTTGGAATAGGATTTTGGACCTTTTGGATGAGATGAGAAGTAAAGGGCTTGAGTATGATGAATTTACTTGCAGCACTGTGATATCTGCTTGTGGGAGAGAGGGTATGCTTGATGAAGCAAGGAAGTTTTTTGCTGAGTTGAAATTGAATGGATATAAACCTGGAACTGTTGCATATAATTCTATGCTGCAGGTTTTTGGAAAGGCTGGGGTTTACGCTGAGGCATTGAATATCTTGAAGGAGATGGAGGATAATAATTGCCCTCCTGATTGTGTTACTTACAACGAGCTCGTGGCGGCATATGTAAGAGCTGGGTTTCTTGATGAAGGGGCTGCTGTCATAGATACGATGATGAGCAAAAGAGTGATGCCAAATGCTATTACTTATACCACTGTGATAGATGCATATGGTAAGGCGGGAAAGGAGGACAAGGCGCTAGCATTGTTTGGCAAGATGAAGGACTTGGGTTGTGTTCCCAATGTGTGCACTTACAACTCTGTTCTTGCAATGCTAGGCAAGAAGTCAAGATCTGAAGAGATGATAAATGTTCTCTGTGACATGAAATTGAATGGATGTGCTCCTAATCGAGCTACGTGGAACACCATGCTTGCTGTTTGTGGTGAGAAGGGTAAGCACAATTATGTTAATCAGGTTTTAAGGGAAATGAAAAGATGTGGGTTTGAGCCTGACAAAGACACATTCAATACATTGATTAGTGCATACGGTCGGTGTGGATCTGAGGTTGATTCTGCAAAAATGTATGGGGAGATGGTCAAAGCAGGCTTTACTCCGTGTGTAACAACGTATAATGCTCTTCTAAATGCTCTTGCAAGGCGAGGTGATTGGAAAGCAGCAGAATCTGTCATTCTGGATATGCGGACTAAAGGCTTTAAGCCTAATGAAACTTCATACTCACTGTTGCTTCACTGTTATTCCAAGGATGGGAATGTCAAGGGGATAGAAAAAGTTGAGAAAGAAATTTATGATGGTCATGTCTTTCCTAGTTGGGTACTTCTGAGATCCCTTATCATTGCAAACTACAAGTGCAAACAGCTCAAAGGAATGGAAAAGGCATTTGATCAATTGCAAAAGAATGGATACAAACCTGATTTGGTTATAGTAAACTCCATGCTATCAATGTTTGCCCGAAACAAGATGTTTGTTAAGGCTCGCGAAATGCTACATTTTATTCAGGAAAGTGGGTTGGAGCCAAATCTTGTCACCTATAATAGCTTGATGGACTTGTATGTCCGAGAGGGCGAGTGTTGGAAAGCAAATGAAGTGCTCATGGGGCTTCAAAACTCTGGTCCAAAGCCAGATGTTGTGTCCTATAATACTGTGATCAAGGGATTTTGTAGAAAAGGGCTCATGCAGGAGGCTATTAGAATTTTCTCAGAGATGACCACTAAGGGGATTCAACCATGTATAGTTACATACAATACTTTCTTGACAGGTTATGCATGGATGGGGTCATTTGCCGAAGCAAAAGAAGTCATTAGATATATGATTGAGCACAATTGCAGGCCCAATGAACTAACTTACAAGATTGTAGTTGATGGTTATTGTAAAGCAAGGAAACATAAAGAAGCCATGGACTTTTTGTCTAAGATTAAGGAGATTGATATCTCTTGTGATGATCAATCTGTGAAAAGGCTAGCCTCTTGCATAAGGGAGAGTTTAGGGACTTGA 2625 0.416 MPITTFTVTHLSLSSFPHTSPIAYKSQSQPYSEPKTHLLLLPLHFLVAMEGTLFPNRPVLPSTPHKPTHPLKFKPTFLPPPSPPPPPPPSFHLDSLLQHLNHLSSVPITSHTLTLVPPIHDNNTTHFQDSLISEHPISPSAPQDHFDDANFKFLSEKGKFMLNSIVGSPLHELNAFFNSVKFDLLEVDFPSLLKALDLSGNWERALLLFEWIWLHSGNDQKNVRVDNQVVEFMVRILGRESQHSIVCKLFDFIPVEEYSLDVRACTTILHAYARTGKYKRAIHMFEKMKETGLDPTLVTYNVMLDVYGKMGRSWNRILDLLDEMRSKGLEYDEFTCSTVISACGREGMLDEARKFFAELKLNGYKPGTVAYNSMLQVFGKAGVYAEALNILKEMEDNNCPPDCVTYNELVAAYVRAGFLDEGAAVIDTMMSKRVMPNAITYTTVIDAYGKAGKEDKALALFGKMKDLGCVPNVCTYNSVLAMLGKKSRSEEMINVLCDMKLNGCAPNRATWNTMLAVCGEKGKHNYVNQVLREMKRCGFEPDKDTFNTLISAYGRCGSEVDSAKMYGEMVKAGFTPCVTTYNALLNALARRGDWKAAESVILDMRTKGFKPNETSYSLLLHCYSKDGNVKGIEKVEKEIYDGHVFPSWVLLRSLIIANYKCKQLKGMEKAFDQLQKNGYKPDLVIVNSMLSMFARNKMFVKAREMLHFIQESGLEPNLVTYNSLMDLYVREGECWKANEVLMGLQNSGPKPDVVSYNTVIKGFCRKGLMQEAIRIFSEMTTKGIQPCIVTYNTFLTGYAWMGSFAEAKEVIRYMIEHNCRPNELTYKIVVDGYCKARKHKEAMDFLSKIKEIDISCDDQSVKRLASCIRESLGT* 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2295 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Apr1g2295 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 507 541 IPR002885 -
Apr1g2295 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Apr1g2295 874 Pfam PPR repeat family 576 624 IPR002885 -
Apr1g2295 874 Pfam PPR repeat family 506 553 IPR002885 -
Apr1g2295 874 Pfam PPR repeat family 786 835 IPR002885 -
Apr1g2295 874 Pfam PPR repeat family 366 413 IPR002885 -
Apr1g2295 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 577 611 IPR002885 -
Apr1g2295 874 PANTHER OS03G0856100 PROTEIN 49 870 - -
Apr1g2295 874 Gene3D Tetratricopeptide repeat domain 421 537 IPR011990 GO:0005515
Apr1g2295 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 822 856 IPR002885 -
Apr1g2295 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 787 821 IPR002885 -
Apr1g2295 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Apr1g2295 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 717 751 IPR002885 -
Apr1g2295 874 TIGRFAM PPR: pentatricopeptide repeat domain 404 438 IPR002885 -
Apr1g2295 874 TIGRFAM PPR: pentatricopeptide repeat domain 439 473 IPR002885 -
Apr1g2295 874 TIGRFAM PPR: pentatricopeptide repeat domain 754 786 IPR002885 -
Apr1g2295 874 TIGRFAM PPR: pentatricopeptide repeat domain 298 332 IPR002885 -
Apr1g2295 874 TIGRFAM PPR: pentatricopeptide repeat domain 825 851 IPR002885 -
Apr1g2295 874 TIGRFAM PPR: pentatricopeptide repeat domain 334 367 IPR002885 -
Apr1g2295 874 TIGRFAM PPR: pentatricopeptide repeat domain 789 823 IPR002885 -
Apr1g2295 874 TIGRFAM PPR: pentatricopeptide repeat domain 369 403 IPR002885 -
Apr1g2295 874 TIGRFAM PPR: pentatricopeptide repeat domain 264 296 IPR002885 -
Apr1g2295 874 TIGRFAM PPR: pentatricopeptide repeat domain 510 542 IPR002885 -
Apr1g2295 874 TIGRFAM PPR: pentatricopeptide repeat domain 474 507 IPR002885 -
Apr1g2295 874 TIGRFAM PPR: pentatricopeptide repeat domain 685 717 IPR002885 -
Apr1g2295 874 TIGRFAM PPR: pentatricopeptide repeat domain 580 613 IPR002885 -
Apr1g2295 874 TIGRFAM PPR: pentatricopeptide repeat domain 545 576 IPR002885 -
Apr1g2295 874 Pfam PPR repeat 334 363 IPR002885 -
Apr1g2295 874 Pfam PPR repeat 748 780 IPR002885 -
Apr1g2295 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 682 716 IPR002885 -
Apr1g2295 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Apr1g2295 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 752 786 IPR002885 -
Apr1g2295 874 Gene3D Tetratricopeptide repeat domain 538 644 IPR011990 GO:0005515
Apr1g2295 874 Gene3D Tetratricopeptide repeat domain 779 856 IPR011990 GO:0005515
Apr1g2295 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 542 576 IPR002885 -
Apr1g2295 874 PANTHER - 49 870 - -
Apr1g2295 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Apr1g2295 874 Pfam Pentatricopeptide repeat domain 260 310 IPR002885 -
Apr1g2295 874 Pfam Pentatricopeptide repeat domain 671 729 IPR002885 -
Apr1g2295 874 Pfam Pentatricopeptide repeat domain 425 485 IPR002885 -
Apr1g2295 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Apr1g2295 874 Gene3D Tetratricopeptide repeat domain 312 420 IPR011990 GO:0005515
Apr1g2295 874 Gene3D Tetratricopeptide repeat domain 649 770 IPR011990 GO:0005515
Apr1g2295 874 Gene3D Tetratricopeptide repeat domain 167 311 IPR011990 GO:0005515
Apr1g2295 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 331 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2295 Apr-Chr1 32474497 32477175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2295 347 859 Glycosyltransferase AT1G05670 22.957 2.47e-46 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2295 K17710 - gmx:100803889 1368.21