Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2203 ATGGCTGGCTTGATCACTGGTTCTCATTCTCATTTCTCACATGACTCTGATGAGCAGCGTCAGTCACATACCCGACAATCTTCATCAAAAACATGTCGAGTTTGTGGTGATGAGATTGGACAAAAGGAAAATGGGGAGCTGTTTGTGGCTTGTCATGTGTGTGGATTTCCTGTTTGTCGACCATGTTATGAGTATGAGAGGAGTGAAGGGAACCAGTGCTGCCCTCAATGCAACACTCGCTATAAGCGTCACAAAGGTTGTCCTAGAGTGGCTGGAGACGAAGAGGAGAACTTTGATGCAGATGATTTTGATGATGAGTTTCAGCTTAAGAATCATCGTGATGAACATGATGTTAATCATGTGGAAAATGGGGAGTTCAATCAAGAGAAATTTCATACCAATGGTCAAGCTTTCTCTTCCGCAGGAAGTGTCGCTGGCAAGGATTTAGAAGGAGACAAAGAATTCTACAGTAATGCTGAATGGCAAGAAAGAGTAGAGAAATGGAAAGTCAGGCAAGAAAAGAGAGGTCTACTAAACAAAGAGGACGGAAAAGAGGACCAAGGTGAAGACGATGATTACCTTTTGGCTGAAGCTAGACAACCATTGTGGCGCAAGGTTCCAATATCTTCAAGTCTAATCAACCCATATCGAATAGTGATTGTGCTGAGGCTTGTTATCCTTGCTTTCTTCTTCCGCTTCCGTATCTTAACACCAGCATATGATGCATTTGCCTTGTGGCTTATCTCTGTGATATGTGAGATATGGTTTGCACTGTCATGGATTCTTGATCAGTTCCCCAAGTGGTTCCCCATCACTCGTGAAACTTACTTGGACCGTTTGTCTATAAGGTTTGAGCGTGAAGGGGAACCAAACCAACTTGCTCCAGTTGATGTCTTTGTGAGTACTGTGGACCCTTTGAAGGAACCTCCCATTATAACAGCAAACACTGTTCTTTCAATCCTTGCTGTTGACTATCCTGTTGAGAAGGTGTGCTGCTATGTATCAGATGATGGTGCATCTATGCTTTTGTTTGATTCATTGGCAGAAACTGCTGAGTTTGCAAGAAGATGGGTACCCTTTTGCAAGAAATATAGTATAGAGCCCAGGGCTCCTGAGTTCTATTTTTCTCAAAAAATTGATTACTTGAAGGATAAGGTTCAACCTACATTTGTGAAGGAAAGAAGGGCCATGAAGAGAGAATATGAAGAATTTAAAGTGAAAATTAATTCTTTGGTGGCAAAGGCTCAGAAGAAACCAGAGGAGGGGTGGGTGATGCAAGATGGAACTCCATGGCCTGGGAACAACACTCGTGACCATCCAGGAATGATTCAGGTATATTTAGGAAGTGCTGGTGCATTAGACGTGGAAGGCAAGGAACTACCAAGACTTGTGTATATTTCACGTGAAAAACGTCCTGGTTATCCACATCACAAGAAAGCTGGTGCCATGAATGCTTTGGTTCGAGTTTCTGCTGTGCTTACAAATGCACCATTCATGTTGAATTTGGATTGTGATCACTACATCAATAATAGCAAGGCAGTAAGAGAGGCTATGTGCTTTTTAATGGACCCCAACCTTGGGAAGAAACTTTGTTACGTCCAATTTCCACAAAGATTTGATGGTATTGATCGCCATGATAGATATGCTAACCGCAACACTGTGTTCTTTGATATCAATATGAAAGGGCTTGATGGGATTCAAGGACCAGTGTATGTCGGTACTGGAACTGTGTTCAACAGGCAAGCATTATATGGTTATGATCCACCAGTATCAGAGAAAAGGCCAAAGATGACATGTGATTGCTGGCCATCATGGTGTTGTTTTTGTTGTGGTGGTTCAAGGAAGTCCAAATCAAAAAAGAAATCAGGAAAAGGTCTCTTTAGTGCATTATACTCCAAGAGCAAGAAGAAGAAAATGATGGGAAAAGACTATGTTAGAAAAGGGTCAGGGTCAATGTTTGATCTTGAAGAGATTGAAGAAGGACTTGAAGGGTATGAAGAGCTAGAGAAATCATCCCTCATGTCCCAGAAAAGTTTTGAGAAGCGATTTGGGCAGTCACCAGTTTTCATTGCTTCCACTTTGATGGAAAATGGTGGACTTCCTGAAGGCACAAATAGCCAAGCATTGGTTAAGGAGGCCATTCATGTTATAAGCTGTGGTTATGAAGAGAAAACTGAATGGGGCAAAGAGATTGGATGGATTTATGGCTCTGTCACAGAGGATATTTTGACTGGATTTAAGATGCACTGCAGAGGATGGAAATCAGTATATTGCATGCCAAAAAGACCAGCTTTCAAGGGATCTGCCCCTATAAATCTATCAGATAGATTGCACCAAGTTCTGAGGTGGGCTCTTGGTTCTGTTGAGATTTTCCTTAGTCGCCATTGCCCATTGTGGTATGGCTATGGAGGAAAGCTGAAGTACCTAGAGAGGTTGGCTTACACTAACACCATTGTATATCCTTTCACTTCAATCCCTCTGCTTGCATACTGCACAATACCAGCTGTGTGTCTCCTAACTGGAAAGTTCATCATCCCTACTCTGACCAACCTTGCTAGCGTGTGGTTTATGGCTCTATTTATCTCCATCATTTTAACTGGTGTACTTGAGCTTCGATGGAGTGGTGTTACCATTGAAGACTTGTGGCGAAATGAGCAATTCTGGGTCATTGGAGGTGTTTCTGCTCACCTTTTTGCTGTGTTTCAAGGTCTACTCAAAGTTCTTGGTGGAGTAGACACAAACTTCACTGTCACAGCAAAAGCAGCAGATGATACTGAATTTGGAGAACTCTATCTTTTCAAGTGGACTACACTTTTAATTCCACCAACCACTCTTATAATATTGAACATTGTAGGAGTGGTGGCTGGAGTATCTGATGCCATCAACAATGGATATGGTACATGGGGTCCTCTATTTGGGAAGCTTTTCTTTGCCTTTTGGGTCATTGTTCACTTATATCCTTTCCTCAAAGGTCTAATGGGAAAGCAAAACAGGACTCCTACTATAGTGGTCTTGTGGTCAATCCTTCTAGCATCTATTTTCTCATTGATTTGGGTCCGGATTGATCCTTTCTTGCCTAAGCAAACTGGTCCAGTACTCAAACAATGTGGTGTAGAATGCTGA 3123 0.4217 MAGLITGSHSHFSHDSDEQRQSHTRQSSSKTCRVCGDEIGQKENGELFVACHVCGFPVCRPCYEYERSEGNQCCPQCNTRYKRHKGCPRVAGDEEENFDADDFDDEFQLKNHRDEHDVNHVENGEFNQEKFHTNGQAFSSAGSVAGKDLEGDKEFYSNAEWQERVEKWKVRQEKRGLLNKEDGKEDQGEDDDYLLAEARQPLWRKVPISSSLINPYRIVIVLRLVILAFFFRFRILTPAYDAFALWLISVICEIWFALSWILDQFPKWFPITRETYLDRLSIRFEREGEPNQLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVEKVCCYVSDDGASMLLFDSLAETAEFARRWVPFCKKYSIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVKINSLVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSAGALDVEGKELPRLVYISREKRPGYPHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPNLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCFCCGGSRKSKSKKKSGKGLFSALYSKSKKKKMMGKDYVRKGSGSMFDLEEIEEGLEGYEELEKSSLMSQKSFEKRFGQSPVFIASTLMENGGLPEGTNSQALVKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKYLERLAYTNTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIILTGVLELRWSGVTIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAADDTEFGELYLFKWTTLLIPPTTLIILNIVGVVAGVSDAINNGYGTWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPVLKQCGVEC* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2203 1040 Pfam Zinc-binding RING-finger 25 97 IPR027934 -
Apr1g2203 1040 MobiDBLite consensus disorder prediction 1 25 - -
Apr1g2203 1040 SUPERFAMILY RING/U-box 17 98 - -
Apr1g2203 1040 Coils Coil 394 414 - -
Apr1g2203 1040 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 106 IPR013083 -
Apr1g2203 1040 Pfam Cellulose synthase 296 1033 IPR005150 GO:0016020|GO:0016760|GO:0030244
Apr1g2203 1040 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 409 587 IPR029044 -
Apr1g2203 1040 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 20 117 - -
Apr1g2203 1040 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 155 1040 - -
Apr1g2203 1040 CDD mRING-HC-C4C4_CesA_plant 30 80 - -
Apr1g2203 1040 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 155 1040 - -
Apr1g2203 1040 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 20 117 - -
Apr1g2203 1040 SUPERFAMILY Nucleotide-diphospho-sugar transferases 309 844 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2203 Apr-Chr1 31448691 31454870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2203 30 1040 Glycosyltransferase AT5G05170 66.387 0.0 1440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2203 K10999 - gmx:100781996 1966.43